G86217


Basic Information

Item Value
gene id G86217
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18615170 ~ 18618556 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107625
ctgaatcccacacctccccccaggaagacaaccacaaaaatTCCAAAGCTACACTTCTTGGGAGcatgtgactggaccctgcACACAGAACCAGATGTCATGCTTTCTATAAAAgctgtttcattttgttgttcagagagtCTCCGCTGAGGTGGGGAGCTTCCATGTTGGGGCCTTCCAGGTCAgATGGTAGCAAAGATGAGCTACAAACTGAAGAGCCAGGATCAGCAGCTGAGTCAGAGTCAGGCATGGAAACTAGTAACAACTAtttggtattattttgtgtatttgtgtgtcagaGAGTCATTAATGAGTGAAGCAATTTTGATTAGCTAAAATGCTAATGCTACTCATCATGCCTGTACATTGGAATTAATTTTGCCAATTGCAATGTCAGTATAGACTGGTCGATGTCACAGTGTACTTTTTAAAGTTACACTGAagtaacaaatgttttaattttagctCATTTTATCATGCCATACACCATTTTGACAATTTgtatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107625 True 507 lncRNA 0.40 2 18615170 18618556

Neighbor

gene id symbol gene type direction distance location
AMCG00021466 rab9b,LOC103026314,LOC108436189 coding upstream 58770 18555792 ~ 18556400 (+)
AMCG00021465 NA coding upstream 75022 18488903 ~ 18540148 (+)
AMCG00021463 taf1 coding upstream 227647 18338056 ~ 18387523 (+)
AMCG00021455 NA coding upstream 427008 18177180 ~ 18188162 (+)
AMCG00021454 cetn2,LOC108436166,LOC107710936,LOC107663123 coding upstream 444626 18167847 ~ 18170544 (+)
AMCG00021473 tmem55a,LOC107724355,LOC107702130 coding downstream 412735 19031291 ~ 19045850 (+)
AMCG00021475 tmem64,LOC107743834,LOC107696193 coding downstream 489221 19107777 ~ 19119568 (+)
AMCG00021480 pnp4b,LOC107755717,LOC107700705,LOC107704990,LOC107705461,LOC107588484,LOC108437351,LOC108272756 coding downstream 546122 19164678 ~ 19180521 (+)
AMCG00021478 calb1,LOC107704882,LOC107700706,LOC107588486 coding downstream 584322 19202878 ~ 19220274 (+)
AMCG00021479 NA coding downstream 613572 19232128 ~ 19247678 (+)
G86202 NA non-coding upstream 65411 18549428 ~ 18549759 (+)
G86118 NA non-coding upstream 385504 18229465 ~ 18229666 (+)
G86117 NA non-coding upstream 388928 18222835 ~ 18226242 (+)
G86034 NA non-coding upstream 966639 17648274 ~ 17648531 (+)
G86020 NA non-coding upstream 998717 17614614 ~ 17616453 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding downstream 44637 18663193 ~ 18664533 (+)
G86229 LOC106604239,LOC107733406,LOC107748936,LOC104952214 non-coding downstream 60557 18679113 ~ 18679876 (+)
G86284 NA non-coding downstream 534459 19153015 ~ 19153282 (+)
G86309 NA non-coding downstream 605897 19224453 ~ 19226768 (+)
G86323 NA non-coding downstream 639902 19258458 ~ 19258855 (+)
G86121 NA other upstream 365484 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1141774 17470325 ~ 17473396 (+)
G85869 NA other upstream 1611039 16997877 ~ 17004131 (+)
G85787 NA other upstream 1901132 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 2022197 16590181 ~ 16592973 (+)
AMCG00021472 NA other downstream 428493 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 661209 19279765 ~ 19294779 (+)
G86407 NA other downstream 881244 19499800 ~ 19501242 (+)
G86601 NA other downstream 1724054 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 1749597 20368153 ~ 20371536 (+)

Expression


Co-expression Network