G86229 (LOC106604239,LOC107733406,LOC107748936,LOC104952214)


Basic Information

Item Value
gene id G86229
gene name LOC106604239,LOC107733406,LOC107748936,LOC104952214
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18679113 ~ 18679876 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107641
GTAGGTCATGACAACAGCGCTGAGCATCACATCGTTCTTGGAGAAGTTGCAGGGGAAGAGGTCGGTGGGGCCTATCATGGGGATGCCAAACACATAGGGCACCTCATCTCCATGCGCAGCGTCAGACCAAGCCGGCTTCATCAGACTCTGGCAGTGGTGGTAGAAGGCATAGAAGTAAGTGGGTGAGCCGTAGCGTGCATGCAGGTCGGCCGTCACCACTGCTGGCTCCACCCACTGGTGGTCAGTGAAGAGTGCCACCAGCGTCTTGCGGCGCGTCTCAGGATTCTCACGGTCAGCCCAGTCGGTGTACATGAACTTGATGGTCTCACGCAATGTGTCCTTGCCCTCAGGGTAGCCGTAAAGGCTGTCCACGAAGTCTGACACAGAGAAGTCAAAGTCATTGCCAGAGACGCCGTCCTCAGAGTCCACCACATTCTCCACGAAGCGCAGGCCCTCGCCCTGGTTGACCCCCAGCATGATATCGTAGTTGAGGAACTCGCCCTGCTCCATCAAGATCTCTGGATCATCTGGGATGACGTCGCCGTCGATGACCGGCCCGAATGCCACGTGGTAACGCGCTGGCTGGATGTCTTGCTCCACCAGCTCACGGGCACTCTTCTTGCGCAGGCAGTCCACCATGTCCAGTGTGTCCAGCACATTGCAGCCCACCTTCTCTGCCAGGAGCCTTGTGTACTTCACCGGCTGGTAGTTCACAGCCCAACTGGACAACGCAGAGCCACTCTGAATGATCGCTCTATGGAAAA

Function

NR:

description
PREDICTED: neuroligin 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107641 True 764 lncRNA 0.57 1 18679113 18679876

Neighbor

gene id symbol gene type direction distance location
AMCG00021466 rab9b,LOC103026314,LOC108436189 coding upstream 122713 18555792 ~ 18556400 (+)
AMCG00021465 NA coding upstream 138965 18488903 ~ 18540148 (+)
AMCG00021463 taf1 coding upstream 291590 18338056 ~ 18387523 (+)
AMCG00021455 NA coding upstream 490951 18177180 ~ 18188162 (+)
AMCG00021454 cetn2,LOC108436166,LOC107710936,LOC107663123 coding upstream 508569 18167847 ~ 18170544 (+)
AMCG00021473 tmem55a,LOC107724355,LOC107702130 coding downstream 351415 19031291 ~ 19045850 (+)
AMCG00021475 tmem64,LOC107743834,LOC107696193 coding downstream 427901 19107777 ~ 19119568 (+)
AMCG00021480 pnp4b,LOC107755717,LOC107700705,LOC107704990,LOC107705461,LOC107588484,LOC108437351,LOC108272756 coding downstream 484802 19164678 ~ 19180521 (+)
AMCG00021478 calb1,LOC107704882,LOC107700706,LOC107588486 coding downstream 523002 19202878 ~ 19220274 (+)
AMCG00021479 NA coding downstream 552252 19232128 ~ 19247678 (+)
G86227 LOC107748936,LOC107689138,LOC107733406,LOC107663109 non-coding upstream 14580 18663193 ~ 18664533 (+)
G86217 NA non-coding upstream 60557 18615170 ~ 18618556 (+)
G86202 NA non-coding upstream 129354 18549428 ~ 18549759 (+)
G86118 NA non-coding upstream 449447 18229465 ~ 18229666 (+)
G86117 NA non-coding upstream 452871 18222835 ~ 18226242 (+)
G86284 NA non-coding downstream 473139 19153015 ~ 19153282 (+)
G86309 NA non-coding downstream 544577 19224453 ~ 19226768 (+)
G86323 NA non-coding downstream 578582 19258458 ~ 19258855 (+)
G86367 NA non-coding downstream 712221 19392097 ~ 19394874 (+)
G86387 NA non-coding downstream 768853 19448729 ~ 19449107 (+)
G86121 NA other upstream 429427 18248490 ~ 18249686 (+)
AMCG00021441 NA other upstream 1205717 17470325 ~ 17473396 (+)
G85869 NA other upstream 1674982 16997877 ~ 17004131 (+)
G85787 NA other upstream 1965075 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 2086140 16590181 ~ 16592973 (+)
AMCG00021472 NA other downstream 367173 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 599889 19279765 ~ 19294779 (+)
G86407 NA other downstream 819924 19499800 ~ 19501242 (+)
G86601 NA other downstream 1662734 20342610 ~ 20401249 (+)
AMCG00021517 gatad1 other downstream 1688277 20368153 ~ 20371536 (+)

Expression


Co-expression Network