AMCG00021498


Basic Information

Item Value
gene id AMCG00021498
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19523528 ~ 19584960 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021498
ATGCCCGGTGTTCCTCGGTCTGTGTGCAGCGTGGGTTCACTGGACTGGGACACAGAGGAGGCCGGGTCGGctgtgtgctctgtgctgtgcagctGTGTGCCGTGTGTTGCGCAGCTGTGGGATGCGGCTCCAGAGCGCGCAGACGCCGctgctcctcctcttcttcataGCACCAGCCGCACGCAGACGGACCGGCAgcagctctcctcctcctcagacTCGGGATTTGACGGCTCGGTGTTTTCTTCATTCCCCGGAGTGCTCTCGCCCATGGCAGCCCCGTCCGCCCGCCGCCTCCGGACACTGCTCCGCTCGGCTCCGCTGCTGTGGCTGCTCTGCCTCCGAGTCGCGCCCTTCAACCTGGAGGCGGACAACCCCACGGTGTACCAGGGGCCGCAGGGCAGCTACTTCGGCTACTCCGTGGACTTCCACAGCCCGGACGGCAACGCGATGAGCGTCCTGGTCGGGGCCCCCAGAGCCAACACGTCCCAGCCGGGGATCGTGGAGGGCGGCGCGGTGTACTACTGCCCCTGGCCCGCGGCGGGGTCGCACACCTGCCGGCAGATCCCCTTCGACACCACCAACAACAGGATGATCCGAGTGAACGGCACCAGGCAGGCCGTGGAGTTCAAGTCCAACCAGTGGTTTGGCGCTACAGTCCGGACTCACCAGGGCAAAGTGGTGCTGAGCAGTGAGAAGGACCCGGTGGGAACCTGTTTCGTTGCCATCCAGAACTTCAGTGCCTACGCCGAGTACGCGCCCTGCCGCACCAGAGAGCCGGACCCCGAGGGACAGGGATTCTGTCAGGCGGGCTTCAGTGTGGACTTCACAAAGGATGGAAACCTTGTGGTGGGAGGACCGGGAAGCTTTTACTGGCAAGGACAGGTCATCACCACCGGCGTCGCCGAGATCCTCAATGGCTACTCCGTCAAAAACCTGCTGCCGGAGGTGAAGGGGCAGAAGCAGTCGCACGCCGCCTCCGACGCCTACGACGACAGCTACCTGGGCTACTCGGTGGCGGTGGGAGAATTCACCGGAGATTCAGAGCAAGAGCTGATCGCCGGTGTGCCGAGAGGAGCGCAGAACTTCGGATACGTGGCCGTGATCAATTCAACAGACTTATCCTTCATTCAGAATTTCACTGGCGAACAGATGGCTTCGTACTTTGGCTACACGGTGGCTGTGTCAGACCTGAATGGCGACGGGCTGGACGACGTGCTGGTCGGGGCCCCCCTCTACATGGATCGCGAGTTCGAGAGCAAGCCGAAGGAGGTGGGCCGGGTCTACATCTACCTGCAGGAGGAGGAGCTGACCTTCGCCGACACCATTGTACTCTCGGGGACAGAAACATCGCGGTGGGGGCGCCATTCGCCGGAGCGCCGAGGCCGGGTGCTGATCTACAACGGGCACAGTGGCGGCCTGAGGCTGCAGCCCTCGCAGGTCCTGGAGGGGTCCTGGGCCTCGCAGACACTGCCGGCTGGGTTCGGCTTCGCCCTGCGGGGAGACTCAGACCTGGACAAGAACCAATATCCAGCCCGTCCTGTGGTGACCGTGGACGCCCAGCTCCTGCTCAACCCCATGATTCTCAACCCCGAGAATAAAACCTGCCGGCTGCACGACACCGACACCATGGCGGCCTGTCTGACCGTGAGAGTCTGTGCCTCTGTGTCGGGCAACGCCATCCCAGACACCATCGCGCTGAGCGCAGAGCTGCAGCTGGATTGGCTGAAGCAGAAGGGCGCCGTCAAACGCGTCCTGTTCCTGGAGACCCATCAGCACCAGCACATCGTGAGCTTCACCCTGCAGAGGACCCGGCCCCACCAGTGCCAGAGCCTCGTGGTCTACCTGAAGGATGAGACAGAGTTTCGGGATAAACTATCTCCTATCAGCATTGCGTTAAACTACAGTCTGGATGAGTCTACTCCGCCCTCGGGGTCGGCGCTGAAGCCCATACTGAACTATTACAGGAAGCCGTCCTTGCAGgagcagGCCTACATTCTCCTGGACTGTGGAGAAGACAATATGTGCATCCCTGATCTCCAGCTGTCTGCCAGAATGGACCGAGAGCAGCTGACTATAGGAGACGACAACCCGCTCATGTTGACCATCAACGCACAGAACCAAGGGGAGGGGGCCTACGAGGCGGAGCTGCACGTCCTGCGGAGGCTGAACTGTGAGTACCGGATGGAGAACATGACCCGGCTGGTGGTGTGCGATCTAGGAAACCCCATGGTGGCGGAAACTGATCTCTCCGTGGGCCTGCGCTTCTACGTCCAGCGTCTGGAGGAGGTGGGAACTGACATCACGTTTGACCTGCAGATCAAGAGCTCGAACAAGGACAACTCGAAGAGCAACCTAGTCAGCCTGACACTGAACATCACGGCCAGGGCCCACGTTGACCTGCGCGGCGTCTCTCACCCCGCCCAGATCATCCTGCCCTTCCCCAACTGGGAGCCCAAAGAGAAGCCGCTGCACAACAAGGGCCCCAGTGCCATCAGCGACACGCTCCTGGAGGTGGGCTGGCCGAACCGCTACCATGACGAGTTCCTCCTGTACGTGTTCGAGATCCAGACGGACGGTCCGGTCAAGTGCAGAACCAACTCCTCACTCAACCCCCTGGACCTGGAGACGTCAGCGCTCCAGGACACGCCCGAGCTGCTGGGATTCCTGCGCAACTCCACGCCACCCCCCCATGCTCTCCGCAAGCGTGACGTCCGAGCGGCCGAGTCCTACAGCAGCAAGACCCTGAACTGCACTAACATCCACTGCCTGATGGTGGCGTGCCGCGTGGGCCGGCTGGACAAGGGCCAGAGCGCCGTGGTGAAGGTGCGCTCTCGACTGTGGGCTCACACCTTCCTGCAGAGAAAGAAGTACTCGTACTCCCTGAACTCCACAGTGTCGTACAAAGTCTTGGACATGCCGTATCGGATCAAGCCAGCCCGGCTGCCGGAGGAGTCCAAATCAATAGGCACCTTTGTGGTCTGGGCCACCCCCGACGTCTCGTTCGCCATCCCCCTGTGGGTCATTATCCTGGCCATCCTGCTGGGGCTGCTGGTTCTGGCCATTTTGACTCTAGTCATGTGGAAGTGTGGCTTCTTCGATCGTGCTCGGCCTCCCAAAGACGACGTGTCCGACCGAGAGCAGCTGACGGCGGAGAAATCCACAGAAGCATGAGGCGGCCGGCGGATGTGGGCGGCCGGCGATGAGGGAGTCCGGTACTGTCCAGTACTGTTTGTGAGGGATCCTTTCGGGAGACGCCAAAAAAACTGCCTTTCAAGTCTTCCCTGTGACTTCATTTTCCATTAACGAATCGAAATCTGTGAGGTGAACTGCCAGCCAGCGGCCGCTGTGCTCCACGGGCTGCAAAACATACTGCTGACCCGACCCGGGAGCGACGGCCGGCTCTCACAGACTCACACAGCGGTTCTGCTCTTCTCGCGGAATTTGACATGAGTGACACGACAGGAAGACAAGACTGTTACATTCTTGAGCTCATATCTTATTTCTTCTGAGctgttgtacatttttttgCAGCTTTTTTATCTTGTTTCTTCTTTACTCCTGTTATACGTGGAGCACGGCTGGTTCCTGTCCTTGAGAATTTTGTTAGTTTTACGGTCGAATGTTAGTTTTGGTGGCGAGTGATTGGGTCCGCACAGATCTGAACTACATGAGCACTGGACTCTAACACGGCACAGCTTCCAGAAAAACACTTCACCCTCCATGGAAGTGACAgagattcattcattcattttttaaactattttccataaaatgtaatactttgaCTCGTGTTCTGAAACCTGTTTAACTGAAAAGCCCAGAAGCATCCATTGCAGTTTGACTGTGAAACAGATGACGACAGTGTGGACTGTGGCCAGTTGGTCACCTATAATCTGACGGTTACCCTGGCTATGGTTGTGAACACTTTCAGATTCTCAGCCATTTCTCAGCAGTCTGTTCCAGGGGCTCCCAGAGATATTCAGCAGCGGTGCTCTTACCCAGCATGCACTTCCCTGCGAGGTCTGAACCCCCAGGTTTGTCTCTTCATCGATGTGAAGGTCACGTGATTGGCAGGAGTGAACGCCTGGGCGCGGATCTGGACTGTGGTGCGGCTGCCGGGAGGCCCGGGGCTCTGCACCGCTCTGTACAAGCGGCTCTGTCTGATATCAGTTGATCCTGGGCGAACGCCAAACCCAGAGGTTGTAGttcattctgttctgttttgtttgtttgtttgttttcagcctGATGTTCAAATCCAGTGATGAAGTACcagagaaattaaacacaataaagtgTCTGAGCAGCGAAGCCCGTGGTGCCGATGTCAGAATCTCTGCAGACGAGCTTTTTAcaacattattgttttatatgtttttcaagaaaatatagaacaaaCATGGATTTTTCTCTTTACTAACACATTGGAATCTACCTGTACTTCCCATTTGGACCTGTGCCTCCCGTACAGGACCTGTATCTCCCTTACAGTACCTCTGCTATCCTTACAGGACCTGTAATTCCCTAATTTGTGTGCACAGATTCTCTCTGACAGCAGCCCTCTTGAGTTTGGTCTTTCTTGAAAGTATAAATCATCACAAACCCAATTCACACCTGGATATGTCAGTCCGGTTCCCCATGTGCTGCAGCAGGATGACTTTGCCTCATCCACAACCGAGCagtgacagaaacacacaaacacacaacacgtGAGCAAACCCAGCAGGGACAAACATCCCGAGAATGGTATCTTGCGCTCAGAATTGCTGTGTCTGTGACACTTTTTCATCTGcagaataaattattttgtatttattgtgtttacgAAGTTGTTTTGAGGTTTTTCACAGTTGTGGTTGTAATTCTTGGTGTCGTCCACAGGGGGGCAGTGTAGAGAGACAGTAGGGCTGTAGAAACAACACTTCCATCTTTTTTGTCAACTTATTTATTCTGACATCTTATAACAAAGTCACCATGGTAAACATGGAGCAGCCTCCTCCGTTTCTCATCTTGGCCCATTCCTTCTGTGCTCCTcagtttctgaagggaaaataatttttcagaaaaatacacTGAAGTTTTCCATGTTATTTAGCGGATAATGTCTTTAACCGTGTTCCTCCAGGTGAACACTGCACTGTGGGTCTCGTCCCTTGTGTTAGTCAGGTTGCCGAAAAAATGACAACCTACACAAGAACAGCCTTAAAACAATCTCTACACAAAGTACAACAAGGAGCGTCTGCTTTCAATGAGTAGAGAGGGACTCTTAAAATACAGATCTGTCAACAGTCTGAGCTGCTCACGTTTTAATTTCCATGACTGCCAGCAGAAACTTCTCTTCATTTTCTCAAAAACGATCCCAGTCCGATATTATTGATGTTTTGTACTTATTCTCCCCTGCGACGGACGACCAGAAGTGTTCACATGAAACTCCCAATCGCCACGTTATGCCCGTTACACAGCCTCGATGGCGTTCACAGAAAAGTGAGTTTAGCATCAGAGCTCCTGTCAATTACACAAGGTTTTTATTCAGTTGAAATAAGAATCGGCTCCTCTGGACCAGTTGTGTCCAGTTATTTGCTTCAGTTGTGGTCCTGGTTTTCAATCGGCTAGAGAACTCAGAAGGAGCTCGGACCTTTTCCAGTCCAGGTCCAGAGTCAGTTCAGTGTGTTTTGCGCTGTTTGATGTTTGAGGTCAGTTCTGGGTCAGTGTCTCTCCCAGTTCGATGTGAGGCCGTGCCTTGTAGCTGCTGCTTATTTTAagactttaaaacacaatatctGAACAAAGTAGAGTAAGCGTCTGCCATGTTGGTTAATGCACATTCAGGAACATCTTTGTGGAAGGGAAACATCCATTTATATGtgcaatatttaatatactCAAGTTCCTGCAGCGTGTTTACACCGGTTTATAATGTGTCTGTTGTCTGTTTGAATCCTAACAGAGTTGTGTACATAGTTTAGTGAGTAAATTAATCTGAGATTATTAGGCTGGGCTGGTTCTCCTCTCTGAGCAGTAAAAGGGCACCGatctaattataataaattgccCCATTagtcctctctgtgtcctctttctgtattttaatccaATTGCACAGGGCTGTCGAGAAATATTGGCGATCACAGAAGCACGGTATTGATTTTGTAGGGAATTTCTAAGGAGAGGAACTATTGCCTGGCTgagcaaaaaataacattatttctgaaTTTAATTAACATCCCTGGGATTTAAGCTGTTCCCGTTTCACAAGACAAAACCTCTTCACTGCCTTTTCTCCAGGCCGCCTGCAGCTGTGCCAGGTGCCACACTGTGCCAATGAATCCCAGCCTGTGGATCAGCCGTTTCTCAGTCACTCTCTGCTCAGTTTCAGGGTTGTTTTCAGGGTTTGCAAGCCGTCATGGTGGTTTGTTTGTGAGGTGGGACAGTGCATCTGTTTAAAGTGCCTCCCAGTGGTGTCCTCACACAGAAAGCTGATCTGTCTGTCCTCCTGTGTCCGTGTGAAGGCCTGCCCTGAAGACACGTGTTCACCGGACCGGCCCGTGCTTGAATGTGTGACTCTGGGTTTAGAGTAGAATGAGAGCTGTTAGTTTATGAGCAACTGTATATATCAGATAAACAGACcactgttatatattttgtgtgtttttgtaataaagaataaagctgtag

Function

GO: NA

KEGG:

id description
K06584 ITGA8; integrin alpha 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021498 True 6678 mRNA 0.53 32 19523528 19584960

Neighbor

gene id symbol gene type direction distance location
AMCG00021500 NA coding downstream 19963 19500236 ~ 19503565 (-)
AMCG00021497 NA coding downstream 34794 19486628 ~ 19488734 (-)
AMCG00021499 nmt2,LOC107738873,LOC107549229 coding downstream 41295 19472935 ~ 19482233 (-)
AMCG00021494 NA coding downstream 114032 19393011 ~ 19409496 (-)
AMCG00021486 NA coding downstream 139572 19376411 ~ 19383956 (-)
AMCG00021502 LOC103376377 coding upstream 2259 19587219 ~ 19610896 (-)
AMCG00021503 NA coding upstream 183343 19768303 ~ 19775351 (-)
AMCG00021504 NA coding upstream 201854 19786814 ~ 19791172 (-)
AMCG00021508 NA coding upstream 320983 19905943 ~ 19909673 (-)
AMCG00021509 NA coding upstream 366057 19951017 ~ 19962097 (-)
G86386 NA non-coding downstream 75034 19446417 ~ 19448494 (-)
G86324 NA non-coding downstream 264673 19258557 ~ 19258855 (-)
G86285 NA non-coding downstream 370243 19153005 ~ 19153285 (-)
G86253 NA non-coding downstream 517096 19005616 ~ 19006432 (-)
G86249 NA non-coding downstream 604997 18918254 ~ 18918531 (-)
G86474 NA non-coding upstream 315498 19900458 ~ 19900836 (-)
G86472 NA non-coding upstream 319036 19903996 ~ 19912403 (-)
G86477 NA non-coding upstream 327577 19912537 ~ 19918803 (-)
G86530 NA non-coding upstream 567260 20152220 ~ 20152767 (-)
G86598 NA non-coding upstream 740733 20325693 ~ 20339742 (-)
AMCG00021495 acbd7,LOC106595206 other downstream 54746 19446086 ~ 19468782 (-)
G86327 NA other downstream 245505 19275354 ~ 19278023 (-)
AMCG00021483 NA other downstream 249088 19259434 ~ 19274440 (-)
G86241 NA other downstream 613620 18821533 ~ 18909908 (-)
AMCG00021460 rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887 other downstream 1274634 18241237 ~ 18248894 (-)
AMCG00021514 NA other upstream 696192 20281152 ~ 20284979 (-)
G86600 NA other upstream 744462 20329422 ~ 20335304 (-)
G86640 NA other upstream 773341 20358301 ~ 20360255 (-)
G86649 NA other upstream 810652 20395612 ~ 20397783 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other upstream 1136924 20721884 ~ 20724880 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location