AMCG00021502 (LOC103376377)


Basic Information

Item Value
gene id AMCG00021502
gene name LOC103376377
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19587219 ~ 19610896 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021502
ATGTCCGAGCTGAATAAGGACGTGGTGGACCTGGTGTGGGGCAAGCGGGCCGGTGGCAGCGCTATGTCGGACACCGTTTTCTCCCGGTGGACTCAAGGGCTGGTGTTCAGCGAGACGGAGAGCACGGCGCTGGAGCAGTTCCAGGGGGGTCCCTGTGCCGTCATCGCCCCTGTGCAGGCCTGTCTTCTGAAGAACATCCTGTTTAATGGAGAGAACTCCAACTGGAGGGCCTGCTCAGAGGAAGAGCAGAAAGTGGTCCTGTGTTCTACCTTGACTGAGATCCTGGAAATGGTGAAGTCCAAGTCCTACTGGCTTGTGACCTGGTCCAAAGGGAAGACGTTGGAGGAGGACTCGAGCGTCCCGGACAGCCCCCCCGAGCCCAGCCGGCACCCTGAGGAGCAGCTGCCCACTGCCCTGGCTGCGCAGGAGCTCGGCTTCCAGAGGTTTCACGCCGTTGTTCATAAAAGGGCCCTGGAGTCGGCAGCTGAGCTGAAGGAGGCCGTGCTGGAGCTGTTCGACACTTGGAGGAACAAGTTCGGCGTTCTGCTCTTCCTCTACTCTGTCATCCTGACCAAGGGTATCGAGAACATTAAGAACGAGATCGAGGACGCCGCCGAGCCGCTCATAGATCCGGTGTACGGCCACGGCAGtcAGAGTCTAATCAACCTGCTGCTGACGGGCCACGCTGTGTCCAACGTGTGGGACCGGGACCGCGAGTGCTCCGGCATGAAGCTGCGTGGTGTCCTGGAGCAGGCCTCAGTGGGCTTCCTCACACTCATGGAGTCTCTGCGCTACTGCAAGGTCGGAGCGTTCCTCAAATCTCCAAAGTTCCCTATTTGGATACTTGGCAGCGAGACGCACCTCACCGTATTCTTTGCCAAAGAAATGGCTCTGGTGGCCCCCGAGTCCCCGTCGGAGCAGGCGAGGAGAGTCTTCCAGACCTACGACCCCGAGGACAATGGCTTCATACCCGATACGCTGCTGGAGGACGTGATGAAAGCCCTGGACCTCGTCTCCGAGCCTGAATAtgtgaacCTCATGAAGAATAAACTGGACCCTGAAGGACTAGGAATCGTTTTGCTTGGACCTTTTCTTCAGGAGTTTTTCCCCAACCAGGACTGTGGCATCCCGGACTCGTTTCCTGTGTACCACTACAACGGCCTGAAGCAGTCCAACTACGGCGAGAAGGTGCTGTACGTGGAAGGCACGGCCCTCATCCTGGGCTTCGAGGACCCGATGGTGCGCACGGACGACACGCCCATCAAGCGCTGCCTGCAGACCAAGTGGCCGTACATCGAGCTGCTGTGGGCGGCCGACCGCTCGCCCTCGCTCAACTGA

Function

NR:

description
PREDICTED: protein FAM188A-like, partial

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021502 True 1338 mRNA 0.59 15 19587219 19610896

Neighbor

gene id symbol gene type direction distance location
AMCG00021498 NA coding downstream 2259 19523528 ~ 19584960 (-)
AMCG00021500 NA coding downstream 83654 19500236 ~ 19503565 (-)
AMCG00021497 NA coding downstream 98485 19486628 ~ 19488734 (-)
AMCG00021499 nmt2,LOC107738873,LOC107549229 coding downstream 104986 19472935 ~ 19482233 (-)
AMCG00021494 NA coding downstream 177723 19393011 ~ 19409496 (-)
AMCG00021503 NA coding upstream 157407 19768303 ~ 19775351 (-)
AMCG00021504 NA coding upstream 175918 19786814 ~ 19791172 (-)
AMCG00021508 NA coding upstream 295047 19905943 ~ 19909673 (-)
AMCG00021509 NA coding upstream 340121 19951017 ~ 19962097 (-)
AMCG00021516 NA coding upstream 595426 20206322 ~ 20207476 (-)
G86386 NA non-coding downstream 138725 19446417 ~ 19448494 (-)
G86324 NA non-coding downstream 328364 19258557 ~ 19258855 (-)
G86285 NA non-coding downstream 433934 19153005 ~ 19153285 (-)
G86253 NA non-coding downstream 580787 19005616 ~ 19006432 (-)
G86249 NA non-coding downstream 668688 18918254 ~ 18918531 (-)
G86474 NA non-coding upstream 289562 19900458 ~ 19900836 (-)
G86472 NA non-coding upstream 293100 19903996 ~ 19912403 (-)
G86477 NA non-coding upstream 301641 19912537 ~ 19918803 (-)
G86530 NA non-coding upstream 541324 20152220 ~ 20152767 (-)
G86598 NA non-coding upstream 714797 20325693 ~ 20339742 (-)
AMCG00021495 acbd7,LOC106595206 other downstream 118437 19446086 ~ 19468782 (-)
G86327 NA other downstream 309196 19275354 ~ 19278023 (-)
AMCG00021483 NA other downstream 312779 19259434 ~ 19274440 (-)
G86241 NA other downstream 677311 18821533 ~ 18909908 (-)
AMCG00021460 rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887 other downstream 1338325 18241237 ~ 18248894 (-)
AMCG00021514 NA other upstream 670256 20281152 ~ 20284979 (-)
G86600 NA other upstream 718526 20329422 ~ 20335304 (-)
G86640 NA other upstream 747405 20358301 ~ 20360255 (-)
G86649 NA other upstream 784716 20395612 ~ 20397783 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other upstream 1110988 20721884 ~ 20724880 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009987 NA non-coding NC_007127.7 CM002900.2 28270015 ~ 28371330 (+)