AMCG00021522


Basic Information

Item Value
gene id AMCG00021522
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20389757 ~ 20393261 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021522
ATGAACCTGAGCGCAGCGTTACAACGACGCTGCGCGGTGATTGGACGAGCGGCACCCAGGGCTCTTTCCCGATTGGTCGCCGCGAACACTCGACTGACTCTGTGCCGGCTGCTACTGCCTCGACACGCAAAGATGGCGGCTTCCAGTTGGAGCACCCCAGAAGTGCACAGACACCACGAACAGAAGGATGTCTGTCACACCAGAGCGAAGTACAGAGAAGGCAGGAGACCCAAGGCAGTGAAGGTGTACACCATCAATCTGGAGTCGCGCTGGCTGCTGGTGCAGGGCGTGCCGGCGCTGGGCGTGACGTCGGAGCTCGTGCAGCTGTGCGCGCTCTATGGGGCGGTGGAGGAGTACCGCGTGCTGGACGAGTACCCCGCCGAGCAGTTCACCGACGTGTTCTTGATCAAGTTCCTGCGCCTGCAGAGTGCCAGAGTAGCCAAGCGCAAACTGGATGAGAAGAGTTTCTTCGGTGGGTTGCTGCATGTTTGCTACGCTCCCGAATTTGAAACGGTGCAGGATACCCGAGAGAAACTACAGGACAGAAGAAAGTTTATTGCAAGAGTTTTACGAAATAAagTTAAAGACTGTGAAGAGACGGCGCAGGCAGTGGAGGAGCCGGGTATTGTGGAGGAAGCTGTCCGTGATTTGCAGCAAGGCCCTGAGGCTGAGGCTGACACTGGCACTGACGGCGAGAGTGACACTTGGAACAACTACAGCGATTATTATGGCTACCCCAtgctgcctcctcctcctcaggaAGACGTGCACAGGTTTTGGCCGTCCCCTCAGAGTGCTGCCTTCCGCTCTGCAGGGCCGGGGGAAGGCGGCTTGTTACCCGCAGGGTTCAGTCCTGCACCCGAGGATTATTCAGCGGACTCTTGTCGGGAGCCTTCAGGTCCCAGAGACAGCAGGAGACGGGAGCCGTCTGCCTCGAAGGCTAAAGGCACTGTGTCCAGATTCATACCTAGGACCACACACTTGCAGGAACGGAAGAGGAGAGCGGAACAGGCAGGTGTGGCCTCGCTGATGGGAATCCCTGGAACGGACGAGGCTTTGATTGGGCCCAAACTGCCGGAAACGCCCAAACTGGACCTGGGGGATGATTCCCTCAACACGACGGCCAATGTCATCAGGAGCAAGCTAAGAAAGGCGAGTGTGGGGTGTGGAGTGGCTCACATAGGCGCGGCTTTGTCCTGGCACTTCACTTTCtttATCTCTTCAGTTGCCGAGTCAGAGGCTGCGGAGAAGAAGAAGGATGCCCCGAAGCCCCGCAGGAGGATTTAA

Function

GO: NA

KEGG:

id description
K24824 RBM48; RNA-binding protein 48

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021522 True 1287 mRNA 0.58 5 20389757 20393261

Neighbor

gene id symbol gene type direction distance location
AMCG00021518 NA coding upstream 50019 20314180 ~ 20339738 (+)
AMCG00021513 NA coding upstream 115374 20214149 ~ 20274383 (+)
AMCG00021512 fzd1,LOC106605515,LOC105910048,LOC107565291 coding upstream 275662 20112413 ~ 20114095 (+)
AMCG00021511 cdk14 coding upstream 331972 20022522 ~ 20057785 (+)
AMCG00021507 NA coding upstream 407328 19975603 ~ 19982429 (+)
AMCG00021526 NA coding downstream 87950 20481211 ~ 20493174 (+)
AMCG00021527 vps50 coding downstream 112764 20506025 ~ 20524326 (+)
AMCG00021530 vps50 coding downstream 138907 20532168 ~ 20550930 (+)
AMCG00021529 NA coding downstream 161232 20554493 ~ 20563626 (+)
AMCG00021528 vps50 coding downstream 184432 20577693 ~ 20589296 (+)
G86573 NA non-coding upstream 90975 20298462 ~ 20298782 (+)
G86536 NA non-coding upstream 184219 20205192 ~ 20205538 (+)
G86529 NA non-coding upstream 236991 20152245 ~ 20152766 (+)
G86455 NA non-coding upstream 495138 19852369 ~ 19894619 (+)
G86454 NA non-coding upstream 551944 19829816 ~ 19837813 (+)
G86625 NA non-coding downstream 15143 20408404 ~ 20409658 (+)
G86633 NA non-coding downstream 68994 20462255 ~ 20462991 (+)
G86665 NA non-coding downstream 107525 20500786 ~ 20501303 (+)
G86668 NA non-coding downstream 115247 20508508 ~ 20547410 (+)
G86685 NA non-coding downstream 219365 20612626 ~ 20614365 (+)
G86616 NA other upstream 9333 20378423 ~ 20380424 (+)
AMCG00021517 gatad1 other upstream 18221 20368153 ~ 20371536 (+)
G86407 NA other upstream 888515 19499800 ~ 19501242 (+)
AMCG00021485 NA other upstream 1094978 19279765 ~ 19294779 (+)
AMCG00021472 NA other upstream 1334654 19047049 ~ 19055103 (+)
G86688 NA other downstream 274209 20667470 ~ 20667927 (+)
AMCG00021539 pdk4,LOC107722149 other downstream 515556 20908817 ~ 20912002 (+)
AMCG00021550 NA other downstream 705158 21098419 ~ 21109368 (+)
AMCG00021551 NA other downstream 765363 21158624 ~ 21165500 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other downstream 836591 21229852 ~ 21232853 (+)

Expression


Co-expression Network