AMCG00021803 (clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136)


Basic Information

Item Value
gene id AMCG00021803
gene name clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 30267402 ~ 30407772 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021803
ATGGGGGACCCAAACTCCCGAAGAAAACAAACGATGAACCGCCTTCGTGCTCAGCTTCGGAAGAAGAAGGAGTCTTTAGCTGACCAGTTCGACTTCAAAATGTACATCGCTTTCGTGTTCAAGGAAAAGAAGAAAAAGTCTGCACTTTTCGAAGTAGCTGAAGTGGTACCGGTTATGACGAATAACTACGAAGAGAATATTCTTAAAGGTGTGCGTGATTCCAGCTACTCCTTAGAAAGTTCCTTAGAACTGCTGCAGAAGGACGTGGTGCAGTTGCACGCCCCGCGCTACCAGTCCATGCGCAGGGATGTCATTGGTTGCACCCAAGAGATGGACTTCATCCTTTGGCCTCGCAATGACATTGAAAAGATAGTCTGTCTTCTGTTCTCCAGATGGAAGGGGTCTGATGATGAGCCCTTTAGGCCTGTTCAGGCCAAGTTTGAATTTCATCATGGAGACTACGAGAAGCAGTTTCTGCATGCAATGAGCCGAAAAGACAAGGCTGGAATGGTCATGAACAACCCCAGTCAGTCTGTGTTCCTGTTTATGGACAGACAGCACTTACAGACTCCAAAAAACAAGGCCACAGTTTTCAAGTTGTGCAGCATCTGCCTTTACCTGCCACAGGACCAGCTGACCCGCTGGGGGgataaATGttcattaatCTGGGATGAGGGAGGGCAGACTTACGTGATGTTCATGTCCACGCTGACCCCTGGCGCTTGCCGCTCCGTGTGCAGTAACGCGACTGTGGACACCACGTCCACCAGTGTGGCCGTCATGCCTCCGTGCAGAGTGCCGCCGCGGTTGCTCTGCGCCGAGTTCGCCTCCGTCACCAGCTCCGACAAAGCAGTGGCTCAGTGTTACCTTGCCGAGAATGACTGGGACATGCAAAGAGCTTTGAACTCTTTCTTTGAGCCGGACGTGGAGTTCCTCTCTGGTGACGTGTCCCCACACCCGAGTGACGCAGCCGCAATGGAGAGCCAGTCTCAGGCCGTGGCATGCATTGACCTGACTGAGGACGAGCCCACCAGCAGCAGATCAGAAGGCGGCAGTGGAGCAGGACAGTCGGTCCAGGCAGAGCAGGATGAGGACAAGGACAAACTCTCCCTGGTGACTTGGAATATCGATGGGCTGGACTCGGATAACCTCAGAGAGCGCTCCAGGGGACTGTGCTCCTATTTAGCCCTATACAGCCCAGATGTGGTGTTTTTGCAAGAAGTTATACCACCAATTTTAGATTACCTTAAGAAGCGTGCTGTCAGTTACAACATCATTGAAGgTAATGATGAATATTACTTCACCGCCATAATGCTGAAGAAGTCTCGTGTGAAACTCTTGAAAAGGGAGATTGTTCCTTTCCCTTCGACATCAATGTTGAGGAATCTGCTCATTGCAGAGGTCAGCTTCTTTGGGTCAGAGCTGTGCTTGATGACGTCCCATCTGGAAAGCTGTAAAGAACACTCCAAGGAGCGTGTGAACCAGCTGAAAATGGTGCTGAAGAGAATTGGAGAGGTGTCTGAGAATGTCACTGTAATATTTGGGGGAGACACCAACCTTAGGGATCAGGAGgtgACGAAGCTAGGTGGACTGCCCAGCGGTGTGTGTGATGTCTGGGAGTATCTTGGCAAGCCAGAGCACTGCAGGTACACCTGGGACaccaaaaccaacaacaacaagaagGCTCGCTACTTCTGCAGGTTGCGCTTCGACCGCGTCCTCCTCCGGCCTGCCAAGCAGGGAGCTCAGATCACCCCCCAGCACATGGACCTGATCGGGTTGGAGAAGCTGGACTGTGGCCGCTTCACCAGCGACCACTGGGGAATCCACTTTCCGCCCTTCGCTACATCAGGACTAACAGAAGGAGATACAATGGACAGTGAGCCTAAACCTGTGGCAAGCACTGGGGTGAAGGAGGATGAGCCGAGCAGTGCCAGCCCAGAGGAGGGAAGTGAAATCGAGCATTCGTCCCAAGAAGAGCAAGAGGAGCAGGTTAAACTCTCCCTCCTGACCTGGAACATCGATGGACTTGACACTGAAAACATAGTCGAGCGTTTCAAAGGAATGGTCTCGTATGTGGACAAGTTAAGTCCAGATGTGGTGTTTTTGCAAGAACTTATACCGCCATATTTACATTTcctaaagaaacattttaagcaaTACACTATTATCGAAGGTAACACTAAGGGTTATTTCACTGGCATTATGCTGAAGACGTCTCGTGTCACACTGTTGAAAAGTGAGATTGTCAAATACCCGACCACAGAAATGGGGAGGAATCTGCTCATGGCACAGGTACAATTCTGTGGCATAGAGTTGTGTTTGATGACGTCCCATCTGGAAAGCTGCAAAGGAAACTCCCAGGAGCGTGTGAACCAGCTGAGGAGGGTGTTTAAGAGACTAAAAGAAGCACCTGACAGTGTCACCGTGATATTTGGGGGAGACACCAACCTCAGAGACTGGGAGgTGGGGAAGCTCGGTGGGCTGCCCACTGGTGTGTGTGATGTCTGGGAGTATCTTGGCAAACTGGAAGTCTGCAGGTACACGTGGGACAACAAGATCAATGACAACAAGGACACCTCGTACTGTGCCAGGCTGCGCTTCGACCGCATCTTCCTCCGGCCTGCCAAGGAGGGAGCTCAGATCGCCCCCCAGCACATGGACCTAATCGGGCTGGAGAGGCTGCCCTGTGGCCGCTTCACCAGCGACCACTGGGGTCTCCACTGTGgcttcacagtgcagacacAAACCTCACCAGCAACGACTGCGCTACACTGAGAATAGGTCCTGTTTATGAAGCAATGCACACTGGGTATTTGAGCAGAATCTCGGTACAGAAAGCCTCACGCTTTCTTATCTCTCCTCAGATTCATTTTCAGGTGGCTTGTTTCATGAAATACTGTGTACTTTTACTCAGtagagtggagtggagtggagtgtaGGTTGTAGGCCTTgattgggtttgttttttagtcACTGTAAATGATTCATACCTGTAAAGGTACCTTTTTCATATTAGCTTTTCTTTATATCTTTTTAACAACTAATCTAAAGTAAGGGAGGTTATGTACTGCgtaaaaaacagcacatttcattttttttggtagccttttaaaatggtttgtaCATTTACTGTTCTTTCTATTGCTCTTACCTGTGCAgtaatgatatttaaattaactgttcTCATTCAGACAGGTACACTAATAGTTTGCATAGTTTGTTAAAATTTGAATGGTTTTGTGAAAAAGCTTAACCTTAGTTTCAGTTGGATACATGCTTAAGAAATCTTTGTAAGTATTTCTACTTTTGTAATCAATGTTTTTGGGGCACTTCTTGctgattgctttttctttctaaatacaTATATCTAATGGAAGGAGTACCATTTAcgtattttgaaatatgaacataatatatataaattatatgtaaGAATAAATATGTGac
>TU110432
TTTTGGGTTGTTTGTTCTGCGAAGGCCACTTCTCATCGTCTACAGGAGGGGAGCGCCGCGCCGAGGACACGACCGACCGAGCAAACCTCATTTCACGCGTTCACCGCCGAGCATGGGTCCGCCAGGGAGCAAACCGCGCTGTGTATCGTTTGAAAGAATGGAGGATTTCGGTTGGTTTGTCAATTTATCTTGACATGGCGTGTTGGTGGGTGGGGGCTGACGAGtgaaaaaaaaccaaaacaaaacaaaaaacacacacacacacacacacacacacacaaaagaaaaccaagtAAAACTATTTATTACGAAGTCAGATCACACAAATAGTCGAATCACTTTTGCGATGGTGATCTAAGGAAGACGTGTAGGTGCGTGAAGCGTATAAGCATGGCGACACGTTAGAAAGCGGTTTAAAAATGGCCTAATGCGCAGTTGAACCTCAGCTGAAGCACTGCACCGCTCGGAGAATGTAAAGGGAAACGCAGCGCACCTTTTACTGGCAGGCCGCGATTACGCCTCGTCACACTGGATAAGATGTAGTGGTCGTGTCTGTCGTCTCTCGGGCTCTTTGAAAACGCCATCATTATGAACACAGTTGCTGGGCCAGTGCTATTGCCAGTGAACTCCGACAtgtcttctctgtctttttcCCTTTCGTCTGGGGCCATCCTCTCCCGGCATCTGCCTTTCCCTGCCTCGGTCCTCTGTACTCCCCATCCTCTAATAACGCGTTCATAAAAGTAGTCTCTGGAGAGAAATCAAATCCAATAGCACCAGCCATGGACGAGGCTGGGAGAAGACGAACATaagtgtacttttttttttgtttgtttgtttttatatttcgtAGCGATTGTGTCGGCATGGGTTTGATCGCCTCCTTTCGGTTCTTGTCAATTGCATTGTGTGTAGGAATATACCGCatcttaatttgatttttttttttttttccttttggttaAACTCGTTTATTTGGACCCTTCTGTGAAACTGAGTGGCTGGATTTGTTTCGTGTATTTTGGCATAACTAGCTCTGTTCTCCTTCAGTATCAGTATGATCtcttaaatcaaattaaaaataaataaatgcgaATGAACCCCCCTTCCCCACTCGCACCTTCTCACAAACCGCGAAACATGACTTAAGTTTGTATTAGTCCCATCTATTAGTAGTTAGAGTAGACCTTTCACTTAGAGTAGGAATCTACTTTCTTTTctctagtttaaaaaaaaagggaactTGGCACTTCACCCCATGtgctagttaaaaaaataaaatctaaaaaaaattaaaataacgaaaatctatttaaaaaaaaaaagaaaaaaaaaggaaagcgaCCACCATCAGAAATTCACAATGGGGGACCCAAACTCCCGAAGAAAACAAACGATGAACCGCCTTCGTGCTCAGCTTCGGAAGAAGAAGGAGTCTTTAGCTGACCAGTTCGACTTCAAAATGTACATCGCTTTCGTGTTCAAGGAAAAGAAAAAGTCTGCACTTTTCGAAGTAGCTGAAGTGGTACCGGTTATGACGAATAACTACGAAGAGAATATTCTTAAAGGTGTGCGTGATTCCAGCTACTCCTTAGAAAGTCAGGACCAGCTGACCCGCTGGGGGGTGGGAGGCATTGAGGACCACCTCCGCCCCTACATGCCAGACTAGGGTCAACGCCTAGCCACACAGGGAAGATCCTAGAATACCAATACAGCAAGCTCACCTCCACAGAGATTCCTTTATTGATGACAAGTGAACTCGTGCTTGGAACACTCCTTTGTTAACCATTCTCATTAATCCTGGAGCTtcttatttcattcattttattttttaccaaatctagttgttttttttttgtttttttttcctctctctttgaACCTGCACGAACATTGGTTTGTCTGAGTGGTTGTTCCTCGGAGCAGCATTGTTATGGAAAACCAGTAATGGAAGGAACTCTATATGCAAAACAGGAACAAATGACTAAGGTCTTAATGATGGTCCTCTCATTTTGCACTGGTTGTGTGTCCCTGTCATGaatgatactttttttttttttttttttacaggataaATGGTAccagacattttgtttgtttttacagttcattaatCTGGGATGAGGGAGGGCAGGTGAGCAAAAAGTGTGATTTAACTAAACTCTATTATAGATCCTGGAAATGCAGATCAACAAGGTGAAGAACCTTGTCAGTGATCATTCAGTGTAGGCATTgcctttttgttcattttgatttataccTGCTGAGCTGTTTTGAGTTTTGCTGGCTCTTATTTTTGGATATCTTTCCCTGAATTGGCTAagaatttttaaaattatttttcttttgtgaagtTTTATGTACATTAATGCCAGGCAGACCCTAGGTAACATCTGGAGCATGATCAGCTTGGGGATGAGGGTGTAATAATGTGAtgcaaaactgcagaaataAGCTTAAAACGTAATGTTTTCAATGCATATGGTCACATATATTGTTACCACATAAGCAAGTCATGCACTATATTCTGGCTACTGAAAACACATTGTGGGGCTCTAGGAGGGGAAATGTAAAGTGGGGAAAAGATGAAGTACCTAGCAACTACAAGCTGtggaaaactaaattaatggGAGTGTTTAGATttgaacttttttgtttttgttttgaaaggcaAAACTCTTGAAGAGTTAATTGTTGCAGTGCTTTAATGGGATGGGTATTTGTAAGCTGGCTTTACTGGGTATAAGGCACATCAGCAAATTTATATTTGCCTTCTGTAAAATcaacacattgaaataaatgggTGAAAATAATTTACCAT
>TU110433
aaaaaaaaaaaaaaatatttaaaaaaaaaaaaaaaaaaaaaaaaggaaagcgaCCACCATCAGAAATTCACAATGGGGGACCCAAACTCCCGAAGAAAACAAACGATGAACCGCCTTCGTGCTCAGCTTCGGAAGAAGAAGGAGTCTTTAGCTGACCAGTTCGACTTCAAAATGTACATCGCTTTCGTGTTCAAGGAAAAGAAAAAGTCTGCACTTTTCGAAGTAGCTGAAGTGGTACCGGTTATGACGAATAACTACGAAGAGAATATTCTTAAAGGTGTGCGTGATTCCAGCTACTCCTTAGAAAGTCAGGACCAGCTGACCCGCTGGGGGGTGGGAGGCATTGAGGACCACCTCCGCCCCTACATGCCAGACTAGGGTCAACGCCTAGCCACACAGGGAAGATCCTAGAATACCAATACAGCAAGCTCACCTCCACAGAGATTCCTTTATTGATGACAAGTGAACTCGTGCTTGGAACACTCCTTTGTTAACCATTCTCATTAATCCTGGAGCTtcttatttcattcattttattttttaccaaatctagttgttttttttttgtttttttttcctctctctttgaACCTGCACGAACATTGGTTTGTCTGAGTGGTTGTTCCTCGGAGCAGCATTGTTATGGAAAACCAGTAATGGAAGGAACTCTATATGCAAAACAGGAACAAATGACTAAGGTCTTAATGATGGTCCTCTCATTTTGCACTGGTTGTGTGTCCCTGTCATGaatgatactttttttttttttttttttacaggataaATGGTAccagacattttgtttgtttttacagttcattaatCTGGGATGAGGGAGGGCAGGTGAGCAAAAAGTGTGATTTAACTAAACTCTATTATAGATCCTGGAAATGCAGATCAACAAGGTGAAGAACCTTGTCAGTGATCATTCAGTGTAGGCATTgcctttttgttcattttgatttataccTGCTGAGCTGTTTTGAGTTTTGCTGGCTCTTATTTTTGGATATCTTTCCCTGAATTGGCTAagaatttttaaaattatttttcttttgtgaagtTTTATGTACATTAATGCCAGGCAGACCCTAGGTAACATCTGGAGCATGATCAGCTTGGGGATGAGGGTGTAATAATGTGAtgcaaaactgcagaaataAGCTTAAAACGTAATGTTTTCAATGCATATGGTCACATATATTGTTACCACATAAGCAAGTCATGCACTATATTCTGGCTACTGAAAACACATTGTGGGGCTCTAGGAGGGGAAATGTAAAGTGGGGAAAAGATGAAGTACCTAGCAACTACAAGCTGtggaaaactaaattaatggGAGTGTTTAGATttgaacttttttgtttttgttttgaaaggcaAAACTCTTGAAGAGTTAATTGTTGCAGTGCTTTAATGGGATGGGTATTTGTAAGCTGGCTTTACTGGGTATAAGGCACATCAGCAAATTTATATTTGCCTTCTGTAAAATcaacacattgaaataaatgggTGAAAATAATTTACCAT

Function

NR:

description
PREDICTED: uncharacterized protein C6orf62 homolog

GO: NA

KEGG:

id description
K19619 TDP2; tyrosyl-DNA phosphodiesterase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021803 True 3450 mRNA 0.48 22 30390200 30407772
TU110432 False 2821 TUCP 0.41 3 30388837 30394221
TU110433 False 1530 TUCP 0.38 5 30267402 30394221

Neighbor

gene id symbol gene type direction distance location
AMCG00021795 hey1,LOC104947062,LOC107584259,LOC102780967 coding upstream 13049 30250083 ~ 30254353 (+)
AMCG00021794 NA coding upstream 66884 30185320 ~ 30200518 (+)
AMCG00021791 znf704,LOC107696217,LOC107555575,LOC107702114,LOC107584255 coding upstream 140995 30119020 ~ 30126407 (+)
AMCG00021792 NA coding upstream 164272 30093869 ~ 30103130 (+)
AMCG00021790 NA coding upstream 175912 30077372 ~ 30091490 (+)
AMCG00021804 NA coding downstream 844 30408616 ~ 30432115 (+)
AMCG00021810 kcnv1 coding downstream 74804 30482576 ~ 30492325 (+)
AMCG00021812 dpy19l4 coding downstream 119260 30527032 ~ 30561697 (+)
AMCG00021813 NA coding downstream 161430 30569202 ~ 30573271 (+)
AMCG00021811 NA coding downstream 210147 30617919 ~ 30678407 (+)
G88485 NA non-coding upstream 9205 30256024 ~ 30258197 (+)
G88452 NA non-coding upstream 47906 30142195 ~ 30219496 (+)
G88454 NA non-coding upstream 128118 30137538 ~ 30139284 (+)
G88450 NA non-coding upstream 218514 30047128 ~ 30048888 (+)
G88440 NA non-coding upstream 288843 29975041 ~ 29978559 (+)
G88609 NA non-coding downstream 319512 30727284 ~ 30730868 (+)
G88655 NA non-coding downstream 640031 31047803 ~ 31048529 (+)
G88666 NA non-coding downstream 722575 31130347 ~ 31132235 (+)
G88677 LOC101154678 non-coding downstream 806537 31214309 ~ 31214669 (+)
G88741 NA non-coding downstream 1451063 31858835 ~ 31859037 (+)
AMCG00021779 LOC108438266,LOC105891906 other upstream 882077 29378575 ~ 29385325 (+)
AMCG00021772 NA other upstream 992055 29264827 ~ 29275347 (+)
G88276 NA other upstream 1202063 29060887 ~ 29065339 (+)
G88238 NA other upstream 1488669 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 2630318 27632915 ~ 27637084 (+)
AMCG00021802 kdm1b other downstream 42185 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 4518781 34926553 ~ 35077090 (+)
G89142 NA other downstream 4803361 35211133 ~ 35263537 (+)
G89299 NA other downstream 5556799 35964571 ~ 35967384 (+)
AMCG00021900 NA other downstream 6242460 36650232 ~ 36659244 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_07719547_07722201 C11H6ORF62, CUNH6ORF62, C3H6ORF62, CLG10H6ORF62, C12H6ORF62, C23H6ORF62, C6H6ORF62, C18H6ORF62, CLG22H6ORF62, C6ORF62, CSGR19H6ORF62, C4H6ORF62, C24H6ORF62, C2H6ORF62, CLG11H6ORF62, C16H6ORF62, BC005537 coding CI01000054 null 7719497 ~ 7722271 (+)