AMCG00021900


Basic Information

Item Value
gene id AMCG00021900
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36650232 ~ 36659244 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021900
aacagGTAATGACCCCAACACGAGTGGGACAGACTTATGCCTGTGAATCTTCCTCCAGGTACCAGAAAGATGTCTATGATGTTCCACCCACAAGACCCCAAGGGGTGTATGACATCCCTCCAGCCAAACTGAAAGGTTCAATGTTTCCTGGACAACTAGGTGAACCTCGAGCTCAAGGCGTGTATGATATCCCACCAACTAATCAAGGGATATACTCAATTCCCCCATCTGCCTGtagagaaagggagggaaacTATGATTTCCCACCACCCATGAAACTTAAACCCGAAGGAGTTTACGATGTACCTCCCACTACCATTGGAAAATCTCCTGAAAAGTCCAATTACGATTTTCCTCCTAGTTCTGAACTAGCGTCACAAGGCAACAATGGAATCTATGACATCCCACCCTCTCAGCTTCTTGGGAATCAACTTAGCTCCCAGACAGATGTGTACGATATTCCACGAGGGATGCAGCCCGCAGGGAAACCAAGGGCTCCCACAGACAGGTCTACAGAGAGGGGAAAAGGGGTGTATGACATCCAACCACAGGTCTCCCAAGATTCCAAAGCTGTGCAGGACATAACAGATGGAATCAACCGGTTGTCCTTCTCCAGCACCGGCAGCACGAGAAGCAATATGTCCACCTCCTCCACAACCTCCAAAGAGTCCTGTCTCTCCACCTCCCCCCTGCAGGAGATCAAGCTCCTCCTGGACCTGGACACAGCCATTCAAAGGATTTCTTGGCTTTATCAGGTAGTGGAGTCCTCCATTGCAGCCCTCATGGGCCACTTAGCTCCAAACTGGAGGTCTTATGACTATATGGAGAAGCATGTGAATGAGATTCACACGGCAGTTGACAAGGTGATGCAAGCCCTGACAGACTTTATGCACTTCAGCAAAGGGGCTGCAGCAAACGCCTCAGGACTCACTGACCTGACTTTATACAACAAGCTGAAAAAGCATCTGCAGAGATTGGATGACTCCAACCAGATCCTTTCACAAACCAGACAGGCTCTAGATGTCTGTAATTGGTCCTTAAATATCTTGGTCATCAACAAGGCCCAGAACAAGTGTGACAGTCTGGAACGTTTCATTATGGTGTCAAGGACAGTCCCAGATGATGTCAAGCAACTAGCATCTGCAATAAGCACAAATGCTGAGCTCCTGTTTAAGCGCGTGCCCAATGGATCTTTTTCCACAGCCATCAGTGAGCAAAGTGGTTCAACagactatatatataacagtcCACAATCCCATGTTGACCAGGAAGAGAAGGACACCCTCCAAAGCAAGACTTTTCCTAGCCGGCCTAATGTTGACGATAAGGCAAATATTAACAGCAGTGAGAAAGGAATAAAGAGCTGGATGGAGGATTATGATTATGTACACCTGCAGGGTAAGGAGGAATTTGAGAGGCAGCAGAAAGAACTgctagaaaaagaaaatatcatcAAGCAGAACAAGATACAACTGGAGCAAGAGCAGAAAGAGGTCATTAAGCCTGTAGAAAATGACATTTCCACCTGGAGTGGGCCTCAGAATGTCCCTCATGCAAACGGAGGGCTTTGTACCAAGGACAAGCAGCTACTATTCTTCTACTCTGAGCAGTGCGAGACTCATTTTGTCACCCTGCTGAATGCCATAGATGCCTTTTTCAGCTGCATCAGTGTGGGACAGCCTCCTCGGATCTTTGTGGCTCACAGCAAGTTTGTCATTCTGAGTGCACACAAACTGGTGTTCATAGGGGATACCCTATCAAGACAGGCTGCCACTTTGGAGGTTCGGAATAAAGTGATGAACTGCAGTAACATCCTCTGTGAGCTCCTAAAGACCATTGTGTCAGCTACCAAAATAGCAGCCCTTCACTATCCCAGCACAGCAGCCGTGCAAGAAATGGTGGACCGTGTAACGGAACTTTCGCATCACGCACAACAGTTTAAAGTACAGCTTCTGCAGATGGCGTCTTTGTAA
>TU111601
GTTGGGCCGGTAGCAGgggtgttttgGGTAAGGAGGAATTTGAGAGGCAGCAGAAAGAACTgctagaaaaagaaaatatcatcAAGCAGAACAAGATACAACTGGAGCAAGAGCAGttgaatCAATTTAAGCAATTGGAGAAAGAGGTCATTAAGCCTGTAGAAAATGACATTTCCACCTGGAGTGGGCCTCAGAATGTCCCTCATGCAAACGGAGGGCTTTGTACCAAGGACAAGCAGCTACTATTCTTCTACTCTGAGCAGTGCGAGACTCATTTTGTCACCCTGCTGAATGCCATAGATGCCTTTTTCAGCTGCATCAGTGTGGGACAGCCTCCTCGGATCTTTGTGGCTCACAGCAAGTTTGTCATTCTGAGTGCACACAAACTGGTGTTCATAGGGGATACCCTATCAAGACAGGCTGCCACTTTGGAGGTTCGGAATAAAGTGATGAACTGCAGTAACATCCTCTGTGAGCTCCTAAAGACCATTGTGTCAGCTACCAAAATAGCAGCCCTTCACTATCCCAGCACAGCAGCCGTGCAAGAAATGGTGGACCGTGTAACGGAACTTTCGCATCACGCACAACAGTTTAAAGTACAGCTTCTGCAGATGGCGTCTTTGTAAGAAGGATACAACGCGCATCAAAGGACTGGTAGATTTGTACTGCAAGGAAAACAAGGaagatttttctctctctctctcatagatatatttgtaaaaatagcTCTTTTTTATGTAGattgatttttataaataaaatgcattttctaatcTAGACTGTCAACAACTGTCATAACATTCCTTCAGTTCATTCTAATTCTTAGTAGTTAAGCACCTTataaaatatgatctgcaaCCTGTTTGATCCACTGTAGATGATTGCTTTACATTTCCCATGTGTTGTACTGAAAATATGCAGTTATTTGTACATTGTCAATTTTCCTTTAGGGTACAGTAAAAATCTGTGGATCTTTTATTAATaaggtttttgttgttcttaagGATAAAAGGTCAATTCATCAGTCTCAGATATAAAACATTTCTGGCATGTGCAGTAGTAGTCTCGATTATACATTATgagatcattttgtttttccaagcaGTTCATCCTCTTGTTTATAGCACCCTGTGATTTTCCAAGTCTGTATGGACTGCTTGTAgcaatagatatatatacattttctatgatttttttaattctatttaataatttaatttttttcataccTACTAAGAACTTTGTGTAGTCTTTAGCTGATATTATCTGTCCCATTACTGTGAATTACTGTGCAATTGAAAGCACTTGTTTATTGAAGAACAACCTTAAAGGATATCCTTAAAAACTGGATTAATTTTGCAGCAATGCATTGTGTCAAAGTCAATATATGATCGTAAGAAATGTGCAACAAATCAACCACAGAAATTAGAGGATTGTAttgtatgtacatgtatgtatttagacATGTTTTATTGAGGAGCTTTCAAAAACTGggctaatttaaaatatgtaaatatcggtgtgtaaattaaaaacgaaactaaaaaaaggatttcagatTCTAGTGATCTCCTATAAACTATATGAAAGCCACAATTCATGGACAATATCCTTAATGAGTAAAGAGTAAACTAACAGTTTAGTTACAAAATTTGGTGTAAAGtctatccatttatttttcgtttttttctgGATGGGTAAATGGTTaaatttgtgtttctcttctttATATAATCTTAGTAGCAATATTAATTTACTGCATAAATAATGTAAGCacctttcagaaataaatatttatttttgcaaaatagAAAATTGTTTTTGGTAACGGAAATGTAAACTTATTCTGTATTACATATCTAAACAGTCAAACGGTGAACCATAATTGATAGATGGTGATTTCAGTTTGCAGagatcaaattgtatttttagagATATTTGTCTTTCTCAtatattcattgttttaatatgtttttggaaAGGATTCAATGGGAAATCATTAATATAGTATCCTACATATGCTttcatttatgtgtgtgttataaGAGTTTCGTGGCAGTTCTGCAATAAAACCACCAACTTCATTCATAGTAGTATGTATAAAGTACTGACTTGAAATAGAtacctttattaaaacattaaatggaGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021900 False 1973 mRNA 0.47 5 36650232 36657721
TU111601 True 2149 lncRNA 0.34 3 36654956 36659244

Neighbor

gene id symbol gene type direction distance location
AMCG00021899 LOC108426911,LOC108257397,LOC107601986,LOC107707114,LOC107677659,LOC107591967 coding upstream 148404 36465786 ~ 36501828 (+)
AMCG00021893 NA coding upstream 636577 35984055 ~ 36013655 (+)
AMCG00021894 NA coding upstream 762979 35864749 ~ 35887253 (+)
AMCG00021886 NA coding upstream 1056894 35579959 ~ 35593338 (+)
AMCG00021884 NA coding upstream 1432101 35200245 ~ 35218131 (+)
AMCG00021911 NA coding downstream 1461080 38120324 ~ 38121572 (+)
AMCG00021910 NA coding downstream 1477878 38137122 ~ 38142159 (+)
AMCG00021912 NA coding downstream 1736562 38395806 ~ 38397674 (+)
AMCG00021914 NA coding downstream 2196582 38855826 ~ 38865619 (+)
AMCG00021915 NA coding downstream 2699474 39358718 ~ 39369622 (+)
G89448 NA non-coding upstream 34686 36595719 ~ 36615546 (+)
G89443 NA non-coding upstream 87819 36562007 ~ 36562413 (+)
G89430 NA non-coding upstream 138732 36511189 ~ 36511500 (+)
G89342 NA non-coding upstream 234391 36414644 ~ 36415841 (+)
G89329 NA non-coding upstream 401811 36247059 ~ 36248421 (+)
G89465 NA non-coding downstream 64868 36724112 ~ 36725391 (+)
G89480 NA non-coding downstream 188766 36848010 ~ 36855391 (+)
G89516 atp9b,LOC104955405 non-coding downstream 349230 37008474 ~ 37010542 (+)
G89527 NA non-coding downstream 458308 37117552 ~ 37208252 (+)
G89538 NA non-coding downstream 599317 37258561 ~ 37258835 (+)
G89299 NA other upstream 682848 35964571 ~ 35967384 (+)
G89142 NA other upstream 1386695 35211133 ~ 35263537 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other upstream 1573142 34926553 ~ 35077090 (+)
AMCG00021802 kdm1b other upstream 6181312 30449957 ~ 30468920 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other upstream 6242460 30267402 ~ 30407772 (+)
G89578 NA other downstream 1462013 38121257 ~ 38151049 (+)
G89632 NA other downstream 2158628 38817872 ~ 38822685 (+)
G89728 NA other downstream 2741280 39400524 ~ 39408261 (+)

Expression


Co-expression Network