G89578


Basic Information

Item Value
gene id G89578
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38121257 ~ 38151049 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU111747
CAGGCTCCAACTTCATAGATAACCCTTGTTATTTGCAGGCCATGTAGAGGCAGATGTGAACCAGAACAATGGGACCTCCACTGAGAAGACAGCGGTGACAGACTCCAAGGGTGCAGAAGGCCCAAAGAATGCCTGGAGCATTGCCAACACAGCTGACCATTCTGCAAATCGCCCCCACTTGATCCGCCTCTTTTCCCGAGATGCTCCAGGCCGTGAGGACAACACCTTCAAAGATCGCCCTTCTGAGTCCGATGAGCTTCAGACCATCCAGGAAAACAGTGGGACAGGTTCTGAGTGTTCGGATTGTACTGAATAAGTGGAAGACTAGTCCTCTCAGGGCCACCGCACATCACAAATAATGGCAACTGCGAGCACCTCGGACCAAGCTAGACGCAGCTCTAGACGGCAAAGGGACACTGGTCTATTGGACCAGCTTGGAAAATTCTTTGGAGGGGAAAGAGAGGGGAGCAGGAAGGGAAAGGTATCTTCAATGAGGAGCAGCCATTTGGGTTCTTCACCTCAGAGGACTCCTCAGCAGTCAGGAGCCCGTGGCAGACCTGGAGATGACAACCCTGTAGTGCACTTCTTTAAAACCATTGTGTCCCCTACTCCTCCACCAAAACCAAAGGGGAGAGGATTATCCCTCGGGAGATTAGGCTGGGGAACTGATGGACAGAAGCAGCCAACACAGGCAAGATTTCTCGAGGCAACAAGATCTCCTCACAAAGGCCACAAGGATCGAAGAGGTGATGGCCAGGGAACTCTCTCCAAAATCTTCAAACTGGGTGGAAGAGACAGCCGATCTGGATCCCCTTCCAAACGCTGAACTAGCGGAGTCCACTTTcttttaatgaagaaaacagttcataatgaaaaataacGACAATAACCATTATGAAGAAAGAAATGTCTCTGCTTTATACATTAACTCCCTGCCCGGcctaaaatgcattaatatgaACTTGCCGTGTTTTTTAGATAGCATCACAATCTTTCTACTTATTTTCTGCTGAGATTGTGCATGCAGTCATCATCCACGAGAACTGTTGTCGATGGTCTCCACACAAGCTCTGCCTGAAGAGGATTACTTTTTGTTGCTTTAGATTTTTAGTTTGTCTTCAGAACTAATATGGGCTGCATAAGACTgagaattatatttatttatttttatttgagggGGAGGCATTTTCACCTTTCATTAAATTGTGTTCAGTTGCTCTGGTGTGAATAACCAAGATGCAACTCTCTTCAGTGTTTTGTCCCCCTCACAAAGACAGCCAGTTAACATGAATCACCTTTGTTGCTTTCTGCAATGTATTCACTTTCATAAATACCCATAAGTGGTTATGTTATGCCTTTGTTTGTTCACATGACCAAAAGTCTctaagatgttttatttttcctattatttttaattatatatatatattattgaaggCAAAGAGTATGCCACTCTGTATTGATAAGGGGCTTGTCTGGAGTGCGTAGATTTCTGAATTTAAGAGTGGACTGTGGATGTAAGCTTTGAGGGGAAAAACATCGTTAAGCTACTGTGAAGGTGACAACTTCTATATCTATCTTAATTGTAAAGTGCATTCTAACTGGActacatatataatacactaataagtgttgatgttttaatttcattttgcccccttttttttctccatagaacgtttaaataatttaatttagataCTAAAATCATAACGGGTAtggtgctgtttttttatccagccatatttaaaacacagactgaATGCTCTTCtgaattgcacttttttttttactactgaaattaaattagtcCCATATACCTTGGATTGTTGTCTTCTTGATTTATCTTACCTGCTTCCAATTTATGTAAGTACTGCAAAAGATAAACAGCTAGCCATTTTGTATTGACCAACAATAGTGTGCTGTGACCAAATAGATGTTCTGTCCTCTGTTTAACTACTACCTAAACTATGTCTTTCGTTGGTACCCCTAGTGTATCCAAACAAAGGTAAAGAAGACAAGCACACGTTATAGAAAAGAATGTTATAGAAAGTCGTGGAAAGtcctgaggaaaaaaataaagcctggtTGATGAATTGCATGAACTCTGCTGTGATGCTGCCGATATTCTTTTTTCCAGAAGTTTTCTCGGCATGCTAAAATAAGCTCCCATAACGTGTAACGCTCCTGTGTCCCCACCCACCTTTCCCAATTGTGCTTGTAGTTTCTTTgaatgaatgtaaattaaaactttgaaacattattgtaaatgtcaaacaaataaaaaacttgcCTTTTAACGTGGTTAAAG
>TU111748
CAGGCTCCAACTTCATAGATAACCCTTGTTATTTGCAGGCCATGTAGAGGCAGATGTGAACCAGAACAATGGGACCTCCACTGAGAAGACAGCGGTGACAGACTCCAAGGGTGCAGAAGGCCCAAAGAATGCCTGGAGCATTGCCAACACAGCTGACCATTCTGCAAATCGCCCCCACTTGATCCGCCTCTTTTCCCGAGATGCTCCAGGCCGTGAGGACAACACCTTCAAAGATCGCCCTTCTGAGTCCGATGAGCTTCAGACCATCCAGGAAAACAGTGGGACAGGTTCTGAGTGTTCGGATTGTACTGAATAAGTGGAAGACTAGTCCTCTCAGGGCCACCGCACATCACAAATAATGGCAACTGCGAGCACCTCGGACCAAGCTAGACGCAGCTCTAGACGGCAAAGGGACACTGGTCTATTGGACCAGCTTGGAAAATTCTTTGGAGGGGAAAGAGAGGGGAGCAGGAAGGGAAAGGTATCTTCAATGAGGAGCAGCCATTTGGGTTCTTCACCTCAGAGGACTCCTCAGCAGTCAGGAGCCCGTGGCAGACCTGGAGATGACAACCCTGTAGTGCACTTCTTTAAAACCATTGTGTCCCCTACTCCTCCACCAAAACCAAAGGGAACTGATGGACAGAAGCAGCCAACACAGGCAAGATTTCTCGAGGCAACAAGATCTCCTCACAAAGGCCACAAGGATCGAAGAGGTGATGGCCAGGGAACTCTCTCCAAAATCTTCAAACTGGGTGGAAGAGACAGCCGATCTGGATCCCCTTCCAAACGCTGAACTAGCGGAGTCCACTTTcttttaatgaagaaaacagttcataatgaaaaataacGACAATAACCATTATGAAGAAAGAAATGTCTCTGCTTTATACATTAACTCCCTGCCCGGcctaaaatgcattaatatgaACTTGCCGTGTTTTTTAGATAGCATCACAATCTTTCTACTTATTTTCTGCTGAGATTGTGCATGCAGTCATCATCCACGAGAACTGTTGTCGATGGTCTCCACACAAGCTCTGCCTGAAGAGGATTACTTTTTGTTGCTTTAGATTTTTAGTTTGTCTTCAGAACTAATATGGGCTGCATAAGACTgagaattatatttatttatttttatttgagggGGAGGCATTTTCACCTTTCATTAAATTGTGTTCAGTTGCTCTGGTGTGAATAACCAAGATGCAACTCTCTTCAGTGTTTTGTCCCCCTCACAAAGACAGCCAGTTAACATGAATCACCTTTGTTGCTTTCTGCAATGTATTCACTTTCATAAATACCCATAAGTGGTTATGTTATGCCTTTGTTTGTTCACATGACCAAAAGTCTctaagatgttttatttttcctattatttttaattatatatatatattattgaaggCAAAGAGTATGCCACTCTGTATTGATAAGGGGCTTGTCTGGAGTGCGTAGATTTCTGAATTTAAGAGTGGACTGTGGATGTAAGCTTTGAGGGGAAAAACATCGTTAAGCTACTGTGAAGGTGACAACTTCTATATCTATCTTAATTGTAAAGTGCATTCTAACTGGActacatatataatacactaataagtgttgatgttttaatttcattttgcccccttttttttctccatagaacgtttaaataatttaatttagataCTAAAATCATAACGGGTAtggtgctgtttttttatccagccatatttaaaacacagactgaATGCTCTTCtgaattgcacttttttttttactactgaaattaaattagtcCCATATACCTTGGATTGTTGTCTTCTTGATTTATCTTACCTGCTTCCAATTTATGTAAGTACTGCAAAAGATAAACAGCTAGCCATTTTGTATTGACCAACAATAGTGTGCTGTGACCAAATAGATGTTCTGTCCTCTGTTTAACTACTACCTAAACTATGTCTTTCGTTGGTACCCCTAGTGTATCCAAACAAAGGTAAAGAAGACAAGCACACGTTATAGAAAAGAATGTTATAGAAAGTCGTGGAAAGtcctgaggaaaaaaataaagcctggtTGATGAATTGCATGAACTCTGCTGTGATGCTGCCGATATTCTTTTTTCCAGAAGTTTTCTCGGCATGCTAAAATAAGCTCCCATAACGTGTAACGCTCCTGTGTCCCCACCCACCTTTCCCAATTGTGCTTGTAGTTTCTTTgaatgaatgtaaattaaaactttgaaacattattgtaaatgtcaaacaaataaaaaacttgcCTTTTAACGTGGTTAAAG

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111747 True 2311 TUCP 0.41 6 38121257 38151049
TU111748 False 2278 TUCP 0.41 5 38121257 38151049

Neighbor

gene id symbol gene type direction distance location
AMCG00021899 LOC108426911,LOC108257397,LOC107601986,LOC107707114,LOC107677659,LOC107591967 coding upstream 1619429 36465786 ~ 36501828 (+)
AMCG00021893 NA coding upstream 2107602 35984055 ~ 36013655 (+)
AMCG00021894 NA coding upstream 2234004 35864749 ~ 35887253 (+)
AMCG00021886 NA coding upstream 2527919 35579959 ~ 35593338 (+)
AMCG00021884 NA coding upstream 2903126 35200245 ~ 35218131 (+)
AMCG00021912 NA coding downstream 244757 38395806 ~ 38397674 (+)
AMCG00021914 NA coding downstream 704777 38855826 ~ 38865619 (+)
AMCG00021915 NA coding downstream 1207669 39358718 ~ 39369622 (+)
AMCG00021927 NA coding downstream 1309210 39460259 ~ 39461475 (+)
G89571 NA non-coding upstream 61723 38017304 ~ 38059534 (+)
G89554 NA non-coding upstream 518593 37602437 ~ 37602664 (+)
G89552 NA non-coding upstream 556042 37564974 ~ 37565215 (+)
G89538 NA non-coding upstream 862422 37258561 ~ 37258835 (+)
G89527 NA non-coding upstream 913005 37117552 ~ 37208252 (+)
G89583 NA non-coding downstream 3786 38154835 ~ 38155132 (+)
G89579 NA non-coding downstream 7504 38158553 ~ 38161634 (+)
G89597 znf236 non-coding downstream 97865 38248914 ~ 38250240 (+)
G89607 NA non-coding downstream 231643 38382692 ~ 38382955 (+)
G89608 NA non-coding downstream 267872 38418921 ~ 38419128 (+)
AMCG00021900 NA other upstream 1462013 36650232 ~ 36659244 (+)
G89299 NA other upstream 2153873 35964571 ~ 35967384 (+)
G89142 NA other upstream 2857720 35211133 ~ 35263537 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other upstream 3044167 34926553 ~ 35077090 (+)
AMCG00021802 kdm1b other upstream 7652337 30449957 ~ 30468920 (+)
G89632 NA other downstream 666823 38817872 ~ 38822685 (+)
G89728 NA other downstream 1249475 39400524 ~ 39408261 (+)

Expression


Co-expression Network