AMCG00021772


Basic Information

Item Value
gene id AMCG00021772
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29264827 ~ 29275347 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021772
ATGGCAGaaagcaaccccaaaacaaCGCAGGACCTATCAGATTATGTAAGTAGGATCCCAGTCATGGCCAAACCTGATGACGACCACTCGATCCTCCTCAGAGAGGATGGCCTGGTCCACCTGCCAGCCATTGTGGAGATGAGGATCTGTCTGTTCAGTGCTTCATGGTCAATGCCAAACAAGCCCGGGGCTGTTGAAGTAGTGGGCTGCTCTGAAGCGGCCGCCACACGCACAGAATCCCTGTATAAACGGGCTGTGAGGTTCAAGGCACCGCCAGAGCCAGCTGGTTTGTAA
>TU110198
GTGGAAGGGATTGGATAACACTTGAAACTAGAGCTCATTCTTTGCCAGCTAACGTCAGGAGTCCATCCCAAAGCCAGGTCAATTAGCCAGACAGTGATCAAATGCCACACCGtaacatgcatttcaataaGCAGATGCAAGAAGCAGGAATGAAGCTTTCATCCAACATAATCAAATGACTTCGCTGACATGATTCATTGAAAGCTGCGTTAAGGACGGAAGCCTGAGTGATAGCCATGCTTTGTGTTTACATGCGCACACACCGTCCTGGAGCAGGTTGTGTCCATCTCCTGGGACTTCTACATTGGGACTCggtttgtgtgatttatttgggtgggggggggtcgcATTTCGCTTACCTCATCGCAGTCACACAGACTCCTCGGCGGTATCAGCACAATGATGCGGTCGCTTCCGTTTTTATGTCCATCCCAGCATCGTCATGAAACGGTATCCGCTTTGTGGAGGTGTCCCGGTGTCGGCTGCTGCATCTCCCTCTGGTTTGCAGActctggtgggggggggaagttACTTACCCAGGGAAGTGGTGGTCGCCAGCCCTAGCCGCCCCCTCGCCCCGCCGCCCCACAGAGCCCAGGGACGCTTCCCAGTTATGCGCTCGTGACGTCACGACCAGGGTTTGACAACACAGGCCGACGCGCTTCTGCCGCCGGGTCCTAAATTGTGTTGAGTTCATGTCACGACGTGGCCATACGTGCCACAAACTCTGACAATATACAGTTAAACGCTCAAACTAAACAAGGAAAGAAAACGCCTTAGTTaacagtttgtatttgtataatgttttgtctaataatacaaatctaatcACTAGTTAAACTTTAAAGCCACTTGGAAACTCAATCGCAAACACAATCCTTATGCACTATGCTAGACCATTCCACAGCACTGggttaatgtattaatgtaagtAAATGatcaattattgttattattattattattattattattattattattatgaataatgataatgataatacacTTCCAATCCCAAGAGAGGGTTAAATGTGGGAACACAGAAGTGCCTGAAGGAAGGAAGCGCGTCAGTTACCTGTTTAACCCGATCAGCCTGGGACAGGGCGGCCAGTGCTATTGAAACATCGGACAAAACTTTATATCTTCAACTTATTCATGAACACTTATGCTTGGTTTGTGTTCATTGAATTTCCGAGATTAGAAATCGAAATGTTTTGGCAGACACAAGTTGTTTTGTAGGTATGTGTGAACTTTTAACTGCGTATGTGACATTGGATCCACCGATgatccaaaataataattacataaccCATTCGATTTGATACTTGACGTTTCACCATGTTTTTTGGTTATGCATTTCGatataatttgacacaaaaagCATAagcataatatatgtatttactgatAGTGTACATGTGCGACCGATGGAAGAGGACTCACACTAGCTGTTTCTGCGTGAGAACAGTCAGGGTCAGTagcgcagctctgcgcagatctgcagctGCGTTGTTGCCAGGCTCTTGTTAGGACGCTTGCTGTGACAAACCGTCCGTTTCTGTGGCCGACAGTGGCAAGCAGACCTCTGAtcaagagagagacagcacCATGGCAGaaagcaaccccaaaacaaCGCAGGACCTATCAGATTATatGGAAACAATGATGCAGAACCTACAAAGCAAGTTTCAAGCTATGTCTGACCAGATTGTCTCAAGAATGGATGAAATGGGAAACCGCATCAatgctctggaaaaaaatgtggCAGACCTAATGACGCAGGCAGGAATGGAGGAGCCACAGGCAGATATCAAATACAACTAGAGAACGATGATGTTGtgcacagtgcagtgacaggCTGTGGTGAACAGAAGGACACAATGCTGCAACACTCAGGAAAACTCACCCACAGACAGCGCAAGGATTAGTCCTCTTCTACTCCATCAACAGAGGTGCTCAGAAGAGGATGCTTCCAGTAGTCCTTCTGGACATTTCAACAGTGTTCTCAAACTTTTCCACATTCATCATTATAACAAAAAGGTGGTTTAAACTTAGTTTAGAATTATAACACATGATTGCAGACTTACTGTGAACTCAAATCTTATGTTATATTGTTCaaactcaaaataataaaaatgtattaaaagcgTTTtggtttttataattt
>TU110201
CTTTTCAGCAATACTATATAACACTTCATCCATTTTCATGCAGGTAGGATCCCAGTCATGGCCAAACCTGATGACGACCACTCGATCCTCCTCAGAGAGGATGGCCTGGTCCACCTGCCAGCCATTGTGGAGATGAGGTAACATATACGACATCTTGAGGCAAGGGGAGACTTATTtcctaaaaagaaaaactcaaagacaaatatgaattaaaaacaatattttcgcGGTCCCTTTTCACGAactttaaaatgatgaaaaataaaaacaaatgtgcctgATCCTGCTACCTTCCCAGAGGC

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021772 False 294 mRNA 0.54 4 29266438 29275347
TU110198 True 2170 lncRNA 0.44 4 29264827 29268282
TU110201 False 302 lncRNA 0.42 2 29270557 29271545

Neighbor

gene id symbol gene type direction distance location
AMCG00021769 NA coding upstream 41515 29210277 ~ 29223312 (+)
AMCG00021768 NA coding upstream 169566 29076101 ~ 29095261 (+)
AMCG00021766 cpsf1 coding upstream 222886 29025563 ~ 29041941 (+)
AMCG00021765 NA coding upstream 243086 29007396 ~ 29021741 (+)
AMCG00021764 NA coding upstream 258930 28991590 ~ 29005897 (+)
AMCG00021781 NA coding downstream 330793 29606140 ~ 29648683 (+)
AMCG00021782 NA coding downstream 478064 29753411 ~ 29782570 (+)
AMCG00021784 LOC107677448,LOC106606150 coding downstream 513387 29788734 ~ 29804747 (+)
AMCG00021785 gmpr,LOC108425204,LOC108257268,LOC103024228 coding downstream 540143 29815490 ~ 29830397 (+)
AMCG00021790 NA coding downstream 802025 30077372 ~ 30091490 (+)
G88249 NA non-coding upstream 294879 28921629 ~ 28969948 (+)
G88248 LOC101154678 non-coding upstream 362213 28902398 ~ 28902614 (+)
G88237 NA non-coding upstream 433504 28830906 ~ 28831323 (+)
G88232 NA non-coding upstream 489634 28774871 ~ 28775193 (+)
G88225 NA non-coding upstream 566742 28697878 ~ 28698085 (+)
G88306 NA non-coding downstream 3830 29279177 ~ 29280833 (+)
G88307 NA non-coding downstream 22490 29297837 ~ 29298080 (+)
G88308 NA non-coding downstream 32532 29307879 ~ 29315559 (+)
G88352 NA non-coding downstream 101174 29376521 ~ 29388601 (+)
G88403 NA non-coding downstream 449812 29725159 ~ 29725962 (+)
G88276 NA other upstream 199488 29060887 ~ 29065339 (+)
G88238 NA other upstream 486094 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 1627743 27632915 ~ 27637084 (+)
AMCG00021707 NA other upstream 2695679 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 3067751 26152068 ~ 26197076 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 103228 29378575 ~ 29385325 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 992055 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 1174610 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 5651206 34926553 ~ 35077090 (+)
G89142 NA other downstream 5935786 35211133 ~ 35263537 (+)

Expression


Co-expression Network