G88306


Basic Information

Item Value
gene id G88306
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29279177 ~ 29280833 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU110206
tatttttattttttatatataattgcaaCACAATGCTATGAATGAGACTGacacaaacataattttaaacattgagACGTAAACCAGAAATTATCCATGTTCTGATTTCAGTGTGCAACATTGAAGTTTACCATAGAAACTGGTCTTCAAATGATCAGCTTAttagaatatataatatatatataaaaaaatcctaAACAAATTACTTTACAAGTACAAACTAGTACTATAAAAGGCAAAAGAGAAAGAATAACGCTGACCTAAAATTTCTCACATTTCAATCTCTACGAATGAACAGTTCTTCCAAAGGGAAATGGAGGGTTATTAAACATGGGGTTCCtggaacagtttatttttttaaactttaataagaGCGGCAacatatgctttttaaaaatcaaattaactTTCACTATCTATAAACTAGGGTgtaatttacttaaatattaTGGTACTACAATTAATACCATATCAGTTTCtaataactgcatttaaaaaaaaaaaaaaaaaaaagactgtgcATTCTTAAAGcaacatgtattttcttaaacacTGCAATATACATGGACcaaaaaaccaaaccaaaagacAACACATAAGCGATAAGGCCTTCATGGTTGGGGAGGGGACAAGGGGAAGATGTGGCACAGATGCATCTAAAGGCAGCATGCTTTTTCCTCTGCTCTCTCCAAGACTACTGTGGGATTTCAAACctacaaaactattttttggTCAAAGAATGCTGAGGAAGTTGCAGAGATGATGTCACAACAAACAGTTGAGAAGTTTGAGagggtaattaaaaaaaaaaaacttggagCAACCAATTGACGTTGTTCAGCTGACTTCAGGTCACTTTTCCCTCTCAACCCGATGCATTTACACCATATACAGGTGTAAAGTGGTACTGTAGGGCACCATTTAAAAAGCAGCACCTACTGCCCCCTAGTGAAAATCCTCTTAATATATTTGAGCTTTTAGATCCCAGAcacagagtaaaataaaatgactacacagagtgataaacatttgaaatagaCAATTATTCAACAAAAGGACTGACATTTGGCTTTGGTCCACTAGTGTAATGTGTAATGCATCTTATATTCAAACCCACTCATGCTACATGTAAAtgaattaacattaaaaagcacTGGAATTGAAACTGGGTTTTAAAGATGCTGAAAAAGACAGCAGTGATTTCAAGCTTTCTCCATTGAAGATCTAATGACAGGGAAGACCTGctaaataaagtttacaaatattGAACACACAGAGACTTCTGGAAAGggaatttaaaaatgcttccccccacacacatttctTTACCCTACTGTATTACAAGTTCCAATGTAGTTTGAATCCAGGATAAAGCATCATTATAACTAATACTGCTTTTAAGAAGCAAATAGgtaaaatgacaacaaataaaaacttttctATACTGAaaagtgttttagttttgttttttttaaagtcactgCAGAcctttattacatatattaacaGCAGCGATGGTGCCATCACTTAGGATAAATGTGCACATGATTCCAAAAGtcttattaattgtattgttactATAATTACACAAGACTGAAAATAGTTGCTTAAATAAATCATAGGgcattttagtttcatttctcaaattaaataaaaa

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU110206 True 1657 lncRNA 0.32 1 29279177 29280833

Neighbor

gene id symbol gene type direction distance location
AMCG00021769 NA coding upstream 55865 29210277 ~ 29223312 (+)
AMCG00021768 NA coding upstream 183916 29076101 ~ 29095261 (+)
AMCG00021766 cpsf1 coding upstream 237236 29025563 ~ 29041941 (+)
AMCG00021765 NA coding upstream 257436 29007396 ~ 29021741 (+)
AMCG00021764 NA coding upstream 273280 28991590 ~ 29005897 (+)
AMCG00021781 NA coding downstream 325307 29606140 ~ 29648683 (+)
AMCG00021782 NA coding downstream 472578 29753411 ~ 29782570 (+)
AMCG00021784 LOC107677448,LOC106606150 coding downstream 507901 29788734 ~ 29804747 (+)
AMCG00021785 gmpr,LOC108425204,LOC108257268,LOC103024228 coding downstream 534657 29815490 ~ 29830397 (+)
AMCG00021790 NA coding downstream 796539 30077372 ~ 30091490 (+)
G88249 NA non-coding upstream 309229 28921629 ~ 28969948 (+)
G88248 LOC101154678 non-coding upstream 376563 28902398 ~ 28902614 (+)
G88237 NA non-coding upstream 447854 28830906 ~ 28831323 (+)
G88232 NA non-coding upstream 503984 28774871 ~ 28775193 (+)
G88225 NA non-coding upstream 581092 28697878 ~ 28698085 (+)
G88307 NA non-coding downstream 17004 29297837 ~ 29298080 (+)
G88308 NA non-coding downstream 27046 29307879 ~ 29315559 (+)
G88352 NA non-coding downstream 95688 29376521 ~ 29388601 (+)
G88403 NA non-coding downstream 444326 29725159 ~ 29725962 (+)
G88440 NA non-coding downstream 694208 29975041 ~ 29978559 (+)
AMCG00021772 NA other upstream 3830 29264827 ~ 29275347 (+)
G88276 NA other upstream 213838 29060887 ~ 29065339 (+)
G88238 NA other upstream 500444 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 1642093 27632915 ~ 27637084 (+)
AMCG00021707 NA other upstream 2710029 26535093 ~ 26569148 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 97742 29378575 ~ 29385325 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 986569 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 1169124 30449957 ~ 30468920 (+)
AMCG00021881 LOC107748698,LOC102792383,LOC101481807,LOC108256925,LOC106919167,LOC108434168 other downstream 5645720 34926553 ~ 35077090 (+)
G89142 NA other downstream 5930300 35211133 ~ 35263537 (+)

Expression


Co-expression Network