AMCG00021765


Basic Information

Item Value
gene id AMCG00021765
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 29007396 ~ 29021741 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021765
ACCAGGAAGTAAGTGCGCAGAGAAACGTCTCCGTATGCAACTGTCATGAAGTGAACACATGCAGATAATCATTAAGtATGTCAGAGACAGGTGAAGAGGAAAGGACGGTGGAGGTCTCTGGAATACCTGCTGGAGTGGAGGATGAATTTCTGGggctttattttgaaaacaagcGGCGCTCGGGAGGGGGGGCACTTGCTCTTCTCAACAGGAATGGCAGCTGTGCCGTACTGGTGTTTGAAGACGCAGAAGTTGCTCAAAGGGTCCTGTCTCAAGAAACACACATCCTACAAAATGCTAAACTCACTGTTCGGAGACCAGCACCAAAAGACCCTGGGAAATTGCTGCTCAGAAGAATTAATCCCCACACCAGCATGGAAATCCTGGAACTTTATGTGGAGAATGTGACCGGAATGGACAGTGAAGACTACACCATATATCCAGGGCCTGCCGGAGACCTGGCTCTCATACAGTTTCATCAGCCACTCTCTGAAACAGACACTGTTTTAGTCGAAAACCTGCGCCCTACCACCACTGAAGATATGCTCACACTGTACTTTGAGAATAAGcgtggaggaggagaagaggtgAAGGACGTGAGTTTGCAGGTGGGGGGGAAGGCCATGGTCTCCTTTGAGAACTATGAAGctgtggACCGCATTATCAAGAGATCCCACAAACTGGATGGGAGCTTATTAGAAATCCAACCTTATTTTGACTTCCTGCAACCTAAGGAAAGTCCATCATCCCCATGTTCTGTGAATGGCAAAGTGGAGGCAAATGGAGATGCCATTATTCACCCTGACAGCTCAGAACACATACAGATAGACAGTTCTGAGCCAGTACAACCTAGTACTCTGAGCACACTGCCCGCTAAACCTGCAGAGACCCTACGCACCAGTATACCGGACACTGAGTTAGCTGAACCAGCTCAGGTGAAACATGAAGACAGTCCCCAACTCCACTCCAGCAGCATATCCCTGCCTGACCCCCTGAAACTCAGTCTGTTACAGAGCAGCAGCCTCCTTCAGGATCTTCAAGCGAGACACCAGAACCTACAAATGTACATTGCTGACAATGCTGTTAAGATCTCTGGGCCCAGCCAGCTGGAAATTGAACAGATAAAAAATCACATCTTGGAGTTCTTCAGTGCTATCGCGCAGGCTCATTTACCGTTTGATGCTGAAAAGGCCATTTTCCTTTCCAAGGTGGAGGTTCAGGAGAAACTACTGGAGATGTTGAAGAAGGAGAGGATTTTAGCCATGTACACTGTGTCAGAATGCGTGGTCACCGTCATCTCGTTGTCCCTGGACATGGTTAAGCAGGCCTGCAGCTTGATAAAGACTTTGATATGTGATTTCACCATACCCATCTCTCCAGAATATGAGTGCATGCTGTACTCAAAGGAATGGTCCGGCTTCTTGTCCTCGTTGGGGTTCTGTTCTGCGAAAGTGTCGGACAGAGGAGATCAGATCGAAGTGATGACTCTGAGGGAAATGGAAGaagacaaacaaagcaaaatcgTGGAGTTCCTCAGCACTCCGATTCAGGTGGAGTCGGTGATCACTATGGAGCCTGGGATGCTCAAATACATCCAGACTCACTGTCACACCCTTCTGGCAGACATGGATCAAGTCTCCATATTTCCGCTGGAAGCTGAGGATGTCACGGGATTAAGACTACATGGAAACGCAAATGCCTGCCAGATCGCAGATGAGTTGCTGCGTAGTGTGGTGTCTTCAGTCTGTACCAGAACAATCACCCTGCAACGCCCCGGAGTGGCTCGCTTCCTTGTGCAGGAGGAGGGAACGAGCATCCTGCATGAGATACAGACCAAATTCCAGGTCTTCATCAGCCTGGAGAGGATCCACTGGGTACCCTTGGAAGCTGAGaatatatttttggctGCGAGGAAATACATACCGCAGCCAAACTTAAAAAGATTTGTTTCTGAAGACAATGGAGATGCTGCTCAGCCACTGATCCAAACGACTATTAGCACAGATGTGCAAATCAATGATCTTAATAGGCCTGAGAAGGGTCTTTTAGATGAGGCAAAGCGACTTGTATCATTTATTGATGAGCCTTCAAAGGCGTTGGCAGCTCCATCTAGTTTAACTTCTAGAGGAATACAGGACATTGACTTGGATGGAGACCTTTACACTGACCAGCCTGATATCATCTCATCTGATGATGAGGAAAATGTGGAAGAGAGCAATGTTATATTCATGGAGGAGACGCCACGGCTTGCTCCTGAAGGACAGGACCAGGAAGGGCTTGTAACAGAAGACCAGGAACTGAACATTGCTAGGCAGCTTTCTCTGGAGTCTGCCAAAATTGCTGGGAACCTTGAAGAGGATGCCATGCTTTCACTGGCCATACAGTTCTCAATGGAAAGCAAGAGTAAGCCAGTGGAAGCAGAGGATGAACTGCAGAAAGCTTTGGCACTTTCCATGAAAATGCATGAGCAAGACCTGGGTCCCACAGATCCAGGCCTTGACAAAGCCATGTATGCTTCCCTGCAGGATGCCATCCAATCTGCCCACACTGCACAGATACTGGTTTATGCTGGCTATACCAGCGACCTCATCAGAGTAGACATCGCCTTGGGGAAAAAGGTGGGGTTGAGGCAGTGTGAGGAGAAAGTTCAACACAAGTGCCTGTTGAATTTGTCAGATTTCCACAGGAAGTGTGTGGACATCATACAGAGAAAGCATGCCGTGGACATTCAAATTGAAGGAAACACAGCCACAATAAAGGGATTTAAGGACTTTGTTTCCGAGGCAGTCCCCAACATGAAAAAGTTAATAAAGAGAATTTCTGGCTCAGTGAGTGACTCTGAAATTGTGCGGAGCATTCAGTGGGTCTGGAACAATGGGAAGTCCCAGTCGATTCCTTATCCTCCTGAAGCTATTGTTTTCATCGAGAATGCCTATAAAATGAGGGAGAAAAAGATCGATGTAGTGTTTGATAATCAGCCGTATACCATTGACTTTGAAAAGATGGTGGAATTCAGCATTGCCTCTGGAAAGTCGGTACCTATTGCAAGGCAGTTACTGAGGAACCTGGACTTGTATACAGATCTACCAGAGGAGATGAATAGTTTATCAAGCTTACCTGACTCAATGATAGTCAGTGAGGAAACTGATGAATACCAAGAAGTTGTCAAGGACTTCTATGACACCATTAGAGAATACCACAGCAAAATAAAGATTGTAAAGgtTGAGAAGCTTGTGAATGCTTTGCTGTATAATCAGTATAAGCTCAAAAAAGCCAGCATGCTGCAAAGTGCTACAGATCCCGAGGTTGAGAGGACTCTGTATCACGGCACGAGCGGGCACAGCGTGAAAGAGATCTGTATTCATGGATTCAACAGGAGCTTTTGTGGAAAGAATGCAACTGTGTATGGTCAGGGTGTCTACTTTGCTGTAAACTCAGCGTTGTCTGTCCAGGACCAGTACTCTCCTCCTGATGCTGAGGGCcataaatatgtgtttgtggCGAAGGTGTTGACTGGGGACTATACCAAGGGCAGGCATGAGATGAAGACAGCCCCACTGAAAGAGGGCACTGACATCCCACTTCGATACCATAGCGTGGTGGACGTCACAGACTCACCCAGCTTATTTGTTATCTTCAACGACACACAAGCCTATCCGGAATACCTTATTACTTGTAAAAAATTCCATGGTTAAGAAACAGCATGTGGGATCCAACACACCACATTCACTtaagtttgattgttttttccgTCATCCTGctatttaagtttaaaatgctaaaataatataattcatttttatatcgCATCTTTTCTGTACATCTGGTACAGAAATCTGTCATTTTTGATTACTAAGTATGAAGTAAGTGGGGGTaaagaaagtatttaaaatatttgatttactgTGGTAGCTGAGCCCATGTAATTGTTTAATAGCAATGCatcatgttttcttatttagcAGTATCAGCTGTCTttttctatataaatatgttcctatattaaacatacataatactatgtgtgcgtatgtgtgctTTTACAGTAATATAGATCTCACTGCTTCACAGGAAGAATTTGTTTTAATCGCTAAGATGAAAGTTTGAATTCATTTGCAAAAAATGTTCATCATTTCTTATTCAACAACAGTCAAAACTGGGTTAAACTGAGTACCAATGCTTGAGTCATCTAGTTAAAAATAACTGTCATACTGATGTAATTTTAGATGAACACTCACTATTTTGCTGCATTTTATCATTCAAGTTTAATAAGGTCTTAATATGGTCATAACATACTGAAATTAATTCTGTAATACTGTACAGACAAATCAGCTATGGTTTCTGGATGTGCAAAATAGATGccttttttttcaaatacagaaaaatactgATCATACTGCCATATGGAGCTGTATTACCGTCTACCGTTTCACGTGTTTGCCAGGCATGACAGCAGGAGCTTTGAATCGTTGCAAGTCAATTACTACTGAAGAGCACTGAATGCGTGGTGACAGCCTTAAACTATAATGCATCAAATACCAcagcacattattttattttggagtaTATATTTTGATAGATAATTGCACAACAATTCTTCTTGAAATGGTGTCAGTTTATTTCCATCTGGTTAGATCTAATTGCAAAGCATCCTCTCTGTGTAACACAAACCAATATTGTCCTCTGCTTTCTTGcttgttattttgaaaagcttTCACCAGGAGTGTCAGACTGCCAGGTTTTCTAGTGAAATATTAGAAATTAAATCTTTGCTActttaacctgtttttttttttttctgacttctGGATTGCTACCGTTGGTTATCCTGAATTgatatttgttcattattttattaaaataaaattattttgatgATGAA

Function

GO: NA

KEGG:

id description
K15261 PARP10_14_15; poly [ADP-ribose] polymerase 10/14/15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021765 True 4882 mRNA 0.43 11 29007396 29021741

Neighbor

gene id symbol gene type direction distance location
AMCG00021764 NA coding upstream 1499 28991590 ~ 29005897 (+)
AMCG00021759 NA coding upstream 177019 28827986 ~ 28830377 (+)
AMCG00021760 NA coding upstream 203220 28767415 ~ 28804176 (+)
AMCG00021762 NA coding upstream 496581 28510456 ~ 28510815 (+)
AMCG00021761 NA coding upstream 497361 28509629 ~ 28510035 (+)
AMCG00021766 cpsf1 coding downstream 3822 29025563 ~ 29041941 (+)
AMCG00021768 NA coding downstream 54360 29076101 ~ 29095261 (+)
AMCG00021769 NA coding downstream 188536 29210277 ~ 29223312 (+)
AMCG00021781 NA coding downstream 584399 29606140 ~ 29648683 (+)
AMCG00021782 NA coding downstream 731670 29753411 ~ 29782570 (+)
G88249 NA non-coding upstream 37448 28921629 ~ 28969948 (+)
G88248 LOC101154678 non-coding upstream 104782 28902398 ~ 28902614 (+)
G88237 NA non-coding upstream 176073 28830906 ~ 28831323 (+)
G88232 NA non-coding upstream 232203 28774871 ~ 28775193 (+)
G88225 NA non-coding upstream 309311 28697878 ~ 28698085 (+)
G88306 NA non-coding downstream 257436 29279177 ~ 29280833 (+)
G88307 NA non-coding downstream 276096 29297837 ~ 29298080 (+)
G88308 NA non-coding downstream 286138 29307879 ~ 29315559 (+)
G88352 NA non-coding downstream 354780 29376521 ~ 29388601 (+)
G88403 NA non-coding downstream 703418 29725159 ~ 29725962 (+)
G88238 NA other upstream 228663 28778315 ~ 28778733 (+)
AMCG00021745 NA other upstream 1370312 27632915 ~ 27637084 (+)
AMCG00021707 NA other upstream 2438248 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 2810320 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 3137201 25843694 ~ 25870195 (+)
G88276 NA other downstream 39146 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 243086 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 356834 29378575 ~ 29385325 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 1245661 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 1428216 30449957 ~ 30468920 (+)

Expression


Co-expression Network