AMCG00021760


Basic Information

Item Value
gene id AMCG00021760
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28767415 ~ 28804176 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021760
ATGACTGAAATGAGGGGTAGACTTGAAGTCTTTCAACCGAATGAGCTGGGATTAGGAGATGGAGGTCGCGgTGGAGTTTCTATCTTCATGTGCAAAGTCTGCAACTTGTTCTCTCCTAGTCAGACAAAACTCCTCACGCATGTCTCGGAGAAACATGCGATTGAGGGATGCACCGTTAAGAGAAAACGGGGCCGGCCCAAAGGGTCTACCAAGAAGTTCTATGCTGAGGGGGAGCTCTTGGAGACGAGCACGAAGCAGAGACAAGAAGCTCAGCCTGAGACGGTGGAGGAGGTGGAGTCTGAAGACAGCAGCACCTTGGAGTGCAAGAAGTGCAATCGCAAGTTCTGCAACAAGCGGCAAATTAAGAAGCACATCTGCATAATAGGACTAAAGGAAGAGGGTGACGAGGAAGACGACAATGATAATGACCCTGATGCTAAGCTGGCATTAGAGGACAGAGACGAGGACAGAGAGAAGACACCAAAGAGGACCAGGGCCACGCGGACTGAGAGAGCCTCTTCTCTGAAGGACTCTGAACAAACGGGTGGCACCAAAAAGCCCATCATTAGTGTTGTTCTCACAGCGCATGAAGCTATTCCAGGCGCTACAAAGATTGTTCCAATTGAGGCCTCACCGGTGGAAACTGCCCCTGTACCAGAGACGGAGTCGAGTGGCCAGGGAACAGGTTTAAAAAGAGGCTACCAGGAATATGCCATTCAACAGGCATCCTATGAGCTGCCATTGAAGTCAAACAGGCTGGGACAAACACAGCTGAAGATCTTCACTTGCGAGTATTGCAACAAGGTGTTCAAGTTCAAACACTCCTTGCAGGCACACTTGCGCATTCACACCAATGAAAAGCCTTTCAAATGTCCGCACTGCGACTACGCCAGTGCCATTAAAGCCAACCTGAGCGTCCACCTGCGCAAGCACACGGGTGAGAAGTTCAGCTGCGAATACTGCTCCTTCAACTGTCTCAGCAAGGGCCACCTCAAGGTGCATGTTGAGCGGGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAGTACTCCGACGTCAAGAACCTGCTGAAACATGTCCGCGAGAGCCACGACATGGCCGACAAGAAGGTCAAAGACTCCTACGATGAGCTCTGCCTTCAGACCCGAGAAGGTAAACGGCAGCTTCTCTACGACTGCCACATTTGTGACCGCAAGTTTAAGAACGAGCTGGACCGGGACCGTCACATGATGGTCCACGGCACTGAGAGGCCTTTTGGCTGCGAGCTCTGTGACCACGGCTCTACTAAGTACCAGGCGCTGGAGGTCCACATCCGCAAGCACCCCTTCATCTACATCTGCGCCATCTGCCTCCTCAAATTTGTCAGCTCAGTCCGGCTGAAGTCACACATCAAGGAAACTCACGGTGATCAGGAAGAATTGGTGGTTTTCGGGGACTCCATCAACCAGAGCTTTTGTTTGCTGGAACCTGGCAGTGACGTCCAGCGAGACACACTGAAGCAGGAAGAGCTGCAGATCACTGAGGAACTTTCTTTGCTCAACACACAGGATGGGCTTGTCACAGAATTAGGACCAGCCGAAGCAGCTGCTCCACCTGAAACACGTGAAGGCTTAGGAGTCGAAGGACACATATTGGTGCAAGATACTGGTTTTGCAGAAACGATGGAAAGTCTTGTTCAAGAGGTCTGTACCACGCAAAGCAGTGACCTACAAGAAAGCAGAGTAATGAGTTCTGGTAAGGATCCTGAGCAACCTAATGTGACAGAGAAGACCCCTGAGGGATTCCAACATGGGGCAATTCATGAGCTTGTCAATGAAAAGCCGTTTGAAGAAGAAAGCATTCAGCAACTGACTGAAGATTCTGCTGCTGTGGAAAACACGAGTGTACATCTAACAGTGCCTCTGGAAAAAAGTACAATGTCAAGCCAAGAAGACCTAACTTGTAGTCAGCAGGCCACTGAGCCCAGTGTTGTGATGCATGAAGAGTCTCCATCAGAGAAAGTAGAGGCAAGCCAAGGAAATCTAGAAATAGCTCCAAACATGGAAACTGCAGGACAAACAGACCTTTCCCCTAATGGAGACCCGGGAGAGAAAAATGCATCCTCAGACCTTCAAGAGGAGAGGACGGCTTTCAAGCAGATTGTTGACGGTATGCAGAAGAGACAACTGAACATGGAAGTCTTTGAGAAGATTAGAAAAGTTTATGGGGATCTGGAGTGTGAATACTGTGGGAAACTCTTCTGGTATCAGGTGCACTATAACATGCACATTCGCACACACACCCGGGAGCATCTCCACTACTGCTCCCAGTGTAACTACTCCTCCATCACGAAGAACTGCCTTAAAAGACACGTGATCCAGAAGCACAGCAATATCCTGCTCAAGTGTCCTACGGAGGGATGCGAATACAGCACACCAGACAAGTACAAGCTACAGGCGCACCTAAAGATACACACTGACATGGATAAAAGAATCTACGTCTGCCCTGTGTGTGAGAAGTCCTTCCCAGAGGACCGACTTATTAAATCTCACATCAAAACCTACCATCCAGATGTGTCAATGAACACAATCTCAGAAATCCTGGGAAGGAGAGTGCAGCTGAAGGGTTTAATAGGGAAACGGGCCTCCAAGTGTCCTTACTGCGAGTGCTACTTCATGAGGAACGGTTCAGACTTGCAGCAGCACATATGGGCCCATGAAGGAGTAAAACCATTCAAGTGCTCCCTGTGTGATTATGCCACTCGCAGCAAGAGCAATCTCAAGGCTCATATGAACCGACACAACACTGAGAAAACGCACCTGTGTGACATGTGTGGGAAGAAGTTCAAATCAAAGTGCACTTTAAAGAGTCACAAGTTAATGCATACAGCAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021760 True 2883 mRNA 0.49 10 28767415 28804176

Neighbor

gene id symbol gene type direction distance location
AMCG00021762 NA coding upstream 256600 28510456 ~ 28510815 (+)
AMCG00021761 NA coding upstream 257380 28509629 ~ 28510035 (+)
AMCG00021763 NA coding upstream 257941 28506377 ~ 28509474 (+)
AMCG00021758 fam135b,LOC102788634 coding upstream 428895 28317272 ~ 28338520 (+)
AMCG00021753 NA coding upstream 554489 28206504 ~ 28212926 (+)
AMCG00021759 NA coding downstream 23810 28827986 ~ 28830377 (+)
AMCG00021764 NA coding downstream 187414 28991590 ~ 29005897 (+)
AMCG00021765 NA coding downstream 203220 29007396 ~ 29021741 (+)
AMCG00021766 cpsf1 coding downstream 221387 29025563 ~ 29041941 (+)
AMCG00021768 NA coding downstream 271925 29076101 ~ 29095261 (+)
G88225 NA non-coding upstream 69330 28697878 ~ 28698085 (+)
G88161 si:dkey-218f9.10,trappc9,LOC107669949 non-coding upstream 785288 27888558 ~ 27982127 (+)
G88150 NA non-coding upstream 1135761 27627052 ~ 27631654 (+)
G88151 NA non-coding upstream 1145535 27620356 ~ 27621880 (+)
G88145 NA non-coding upstream 1172845 27592630 ~ 27594570 (+)
G88237 NA non-coding downstream 26730 28830906 ~ 28831323 (+)
G88248 LOC101154678 non-coding downstream 98222 28902398 ~ 28902614 (+)
G88249 NA non-coding downstream 117453 28921629 ~ 28969948 (+)
G88306 NA non-coding downstream 475001 29279177 ~ 29280833 (+)
G88307 NA non-coding downstream 493661 29297837 ~ 29298080 (+)
AMCG00021745 NA other upstream 1130331 27632915 ~ 27637084 (+)
AMCG00021707 NA other upstream 2198267 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 2570339 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 2897220 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 3014162 25752357 ~ 25753253 (+)
G88276 NA other downstream 256711 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 460651 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 574399 29378575 ~ 29385325 (+)
AMCG00021803 clg22h6orf62,clg10h6orf62,c24h6orf62,LOC106515831,LOC101464686,LOC108240366,LOC104924567,LOC102228185,LOC103135136 other downstream 1463226 30267402 ~ 30407772 (+)
AMCG00021802 kdm1b other downstream 1645781 30449957 ~ 30468920 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009939 zfat coding NC_007127.7 CM002900.2 25342152 ~ 25360788 (+)