AMCG00021692


Basic Information

Item Value
gene id AMCG00021692
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25752357 ~ 25753253 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021692
ATGAATCTGGTGGACCTGTGGTTAACGCGCTCGCTCTCCATGTGTCTGCTGTTCCAGAGCTTTGTCCTCATGATACTGTGCTTTCATTCTGCCAGTATGTGTCCCAAGGGTTGTACATGCTCCCACTCCGGTGGATTAAATGTCAGCTGTAGCAATGCCAACCTCAAAGAGATCCCCAAGGACCTCCCCCCTGACACTACCCTGCTCAGCCTGGACTCCAATCAGATAACGTCTATCCCTGATGGCATCTTTAAGGACTTGCACCAGCTCAGGGAGCTCAACCTCTCCAGGAACGTGATTGGGTCTGTGGGCGAGCAGGCTTTCAAAGGGGTGGAGGAGAGCCTGCAGATGCTGGACCTGTCCTACAACAAGATCACAACCGTGCATAAGAACGCTTTTGTCAACTTGAAGGCCAAGGCCCTTATTGAGAACAACCCCTGGCACTGTGACTGTACGCTTCAGCAGGTTCTGAAAATGATGTACAACCACGAATCTGTCAGCAGGGTCATATGCAAGACTTCCGAGCTGCAAGATCATGCAGGGAGAGCATTCCTCAAGGCAGACGCTGACCTTTGCAACCTGACCAAAAGGACTACTGACTACGCCATGCTGGTCACCATGTTTGGCTGGTTCACTATGGTGATCTCCTACGTGGTGTATTATGTGCGTCAAAACCAGGAGGACGCCAGGAGACATCTTGAATATTTAAAGTCCCTTCCAAGCAAGCAGAAGAAACCAGACGAAGCTGATGACATAAGCACCGTTGTATGA
>TU109518
CTTGAATATTTAAAGTCCCTTCCAAGCAAGCAGAAGAAACCAGACGAAGCTGATGACATAAGCACCGTTGTATGACATTGtacacattgaaatacacaacaaGGTAGTAAGAATGGAGGTACTGTAGATTAAAAATTGTAGAGCACTGGAGAAAGTGGTATGAAATTGAACACATTCTTTTGAgaacaaaaagtacaaaag

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021692 True 771 mRNA 0.51 1 25752357 25753127
TU109518 False 201 lncRNA 0.36 1 25753053 25753253

Neighbor

gene id symbol gene type direction distance location
AMCG00021689 NA coding upstream 35771 25714584 ~ 25716586 (+)
AMCG00021687 rarb,LOC107372434,LOC107700643,LOC107717720 coding upstream 74176 25632186 ~ 25678181 (+)
AMCG00021688 NA coding upstream 137092 25592537 ~ 25615265 (+)
AMCG00021683 NA coding upstream 319750 25418820 ~ 25432607 (+)
AMCG00021684 rpl15 coding upstream 337209 25412945 ~ 25415148 (+)
AMCG00021694 LOC108441798,LOC107698647 coding downstream 50172 25803425 ~ 25832384 (+)
AMCG00021697 NA coding downstream 168949 25922202 ~ 25943386 (+)
AMCG00021704 NA coding downstream 367598 26120851 ~ 26121836 (+)
AMCG00021702 LOC106588954,LOC103026965,LOC106570445,LOC102291972 coding downstream 377229 26130482 ~ 26148080 (+)
AMCG00021706 gabbr2,LOC107653854,LOC107724329,LOC107710365,LOC107670291 coding downstream 582397 26335650 ~ 26371009 (+)
G87704 NA non-coding upstream 222772 25529324 ~ 25529585 (+)
G87525 NA non-coding upstream 1391448 24359504 ~ 24360909 (+)
G87482 NA non-coding upstream 1490740 24260962 ~ 24261617 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding upstream 1533533 24216374 ~ 24218824 (+)
G87423 LOC103376870 non-coding upstream 1612849 24080736 ~ 24139508 (+)
G87765 NA non-coding downstream 79201 25832454 ~ 25832988 (+)
G87786 NA non-coding downstream 132193 25885446 ~ 25885703 (+)
G87824 NA non-coding downstream 337923 26091176 ~ 26094196 (+)
G87939 NA non-coding downstream 956964 26710217 ~ 26713476 (+)
G87942 NA non-coding downstream 967656 26720909 ~ 26737883 (+)
AMCG00021682 NA other upstream 380018 25276776 ~ 25372339 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other upstream 803257 24909884 ~ 24949100 (+)
AMCG00021657 NA other upstream 1553530 24183208 ~ 24198827 (+)
AMCG00021656 NA other upstream 1574265 24174403 ~ 24178092 (+)
AMCG00021602 NA other upstream 3041213 22697164 ~ 22711144 (+)
AMCG00021693 NA other downstream 90441 25843694 ~ 25870195 (+)
AMCG00021703 galnt12 other downstream 398815 26152068 ~ 26197076 (+)
AMCG00021707 NA other downstream 781840 26535093 ~ 26569148 (+)
AMCG00021745 NA other downstream 1879662 27632915 ~ 27637084 (+)
G88238 NA other downstream 3025062 28778315 ~ 28778733 (+)

Expression


Co-expression Network