AMCG00021682


Basic Information

Item Value
gene id AMCG00021682
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25276776 ~ 25372339 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021682
ATGTCCAGTGAAGTGCAAAGACCTGACGACAGTCCCAGTACGAGTGGAGGGAGCTCGGATATAGATCAGCGGGAGAGTGTTCAAcaagaacaagagagagaacaaacaCAGCCCAAAAAGAAAGAGACTAAAATCTCCAGCAAAACGGCTGCAAAGCTCTCAACAAGTGCTAAAAGCATTGTTGTGCTGAGAGCATCTGTGGTCCATGGTGCTCCCTCAGTTTATTATCTGAGCCAAACGCCGGGTGGGATCTGCAGCTGCAAGGCTCGGCTGgtAGTTAACAACAAAGGCTGGGATAATGTCTCCTACTGTGACCTGACCGAACCCAACCTTTACTGCGTCCACTCTTCAGGGCGGaaaagccgGCTGGCCATGCTCCCACAACTGGGCCTCTTTCAGTCTATAAAcacagaaagagaaaaagacgGACGCGCTGATCCCCTGGTCGGAAGCATCGCTACACAGTATCTGACCAACAGAGCTGAGCATGACAGAATAGCCAAACAGTGGACCAAGAGATATGCCACATAA
>TU109403
CGTGCAGGGGGGGCTGCCTCAGTGTCTGTCGGCGGTGATCCAGTAccgagcgagcgagcgagctaTACGGGAGACACTTACCGTCGGGGTTCACGACACTGATTTTTGGCAACGACAGATCCGTACCCCGATCCTGACAGGACCAAGATGTCCAGTGAAGTGCAAAGACCTGACGACAGTCCCAGTACGAGTGGAGGGAGCTCGGATATAGATCAGCGGGAGAGTGTTCAAcaagaacaagagagagaacaaacaCAGCCCAAAAAGAAAGAGACTAAAATCTCCAGCAAAACGGCTGCAAAGCTCTCAACAAGTGCTAAAAGGATTCAAAAAGAACTAGCTGAAATTACATTAGACCCACCTCCTAATTGCAGTGCTGGCCCTAAAGGAGACAACATCTATGAGTGGAGGTCGACGATCCNNN
>TU109409
CAAGGTCCTGCTGTCCATCTGCTCCCTCCTCACAGACTGTAATCCTGCTGATCCCCTGGTCGGAAGCATCGCTACACAGTATCTGACCAACAGAGCTGAGCATGACAGAATAGCCAAACAGTGGACCAAGAGATATGCCACATAAGAGCCCTGTCCGGACCCCCCGACCTGTCAAAGCACATTCACTAAGTGCAACCATAGACCCTCCCCTCCCTTGTACCttttgtttacctttttgtgAAAAGAACTGTCCTTTGTTCCTTGCTGACTTGAAAGcttctttttttatacaaagAGTAGATTGGGATgttattttccaattaattGAATGTTGGAACTGTTAtagaaaaaaagctttattattacccagctatgtatatgtgtgttatcTCCCTTTTTAAGTGGCCCCAGGAACAAATGCAGAATATATCTTGTTTCTACTTTAATGTAGTGTTTAGGATTACGTTTTTGTACTGAAGTCATTAATGGTGGGTGCATGTAAACAGGATGgagatttgtattaatttcagcAACCGTGGCATCAAACAAACTGTTTATGCTCTGccttttgatattattattattttattttttttgttttgtttgtttgttttttaagaggCTGTTGATGCAGActacagaaatatgtatttgaagatctgcataaaaaaaaaatagtaattgtAAATTTCCTAGCTACCTGCCACTTTTGACTGTGGATCAGTTTGTTGTAcacttgcattattattaaagcactCAATTAAACACTGTGGCTGAAAATACACCTCTACAGGTTATGTTTATcgtcctttttctttttcaaattccCGTCTGCAGTGGAAACTCTTGCACACGCACAGATTTTACCCCTGCTGCAATTTTGTAAATGAATTGAACGTTTAAATGTTACTCACTTTTGAGTCTGACAGCATAATCTCACCACTTCCTCCAGTCATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021682 False 531 mRNA 0.50 7 25279209 25371526
TU109403 False 424 TUCP 0.51 4 25276776 25365977
TU109409 True 958 lncRNA 0.38 2 25366975 25372339

Neighbor

gene id symbol gene type direction distance location
AMCG00021678 kat2b,LOC106588888,LOC106570503 coding upstream 269046 24987477 ~ 25007730 (+)
AMCG00021672 plcl2,LOC106605271,LOC106582018,LOC107688208 coding upstream 754501 24514118 ~ 24522275 (+)
AMCG00021671 NA coding upstream 819414 24444307 ~ 24457362 (+)
AMCG00021664 NA coding upstream 899288 24371867 ~ 24377488 (+)
AMCG00021665 NA coding upstream 923523 24342852 ~ 24353253 (+)
AMCG00021685 NA coding downstream 12457 25384796 ~ 25406102 (+)
AMCG00021684 rpl15 coding downstream 40606 25412945 ~ 25415148 (+)
AMCG00021683 NA coding downstream 46481 25418820 ~ 25432607 (+)
AMCG00021688 NA coding downstream 220198 25592537 ~ 25615265 (+)
AMCG00021687 rarb,LOC107372434,LOC107700643,LOC107717720 coding downstream 259847 25632186 ~ 25678181 (+)
G87525 NA non-coding upstream 915867 24359504 ~ 24360909 (+)
G87482 NA non-coding upstream 1015159 24260962 ~ 24261617 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding upstream 1057952 24216374 ~ 24218824 (+)
G87423 LOC103376870 non-coding upstream 1137268 24080736 ~ 24139508 (+)
G87402 NA non-coding upstream 1244659 24029844 ~ 24032117 (+)
G87704 NA non-coding downstream 156985 25529324 ~ 25529585 (+)
G87765 NA non-coding downstream 460115 25832454 ~ 25832988 (+)
G87786 NA non-coding downstream 513107 25885446 ~ 25885703 (+)
G87824 NA non-coding downstream 718837 26091176 ~ 26094196 (+)
G87939 NA non-coding downstream 1337878 26710217 ~ 26713476 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other upstream 327676 24909884 ~ 24949100 (+)
AMCG00021657 NA other upstream 1077949 24183208 ~ 24198827 (+)
AMCG00021656 NA other upstream 1098684 24174403 ~ 24178092 (+)
AMCG00021602 NA other upstream 2565632 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 2985635 22270871 ~ 22291141 (+)
AMCG00021692 NA other downstream 380018 25752357 ~ 25753253 (+)
AMCG00021693 NA other downstream 471355 25843694 ~ 25870195 (+)
AMCG00021703 galnt12 other downstream 779729 26152068 ~ 26197076 (+)
AMCG00021707 NA other downstream 1162754 26535093 ~ 26569148 (+)
AMCG00021745 NA other downstream 2260576 27632915 ~ 27637084 (+)

Expression


Co-expression Network