AMCG00021687 (rarb,LOC107372434,LOC107700643,LOC107717720)


Basic Information

Item Value
gene id AMCG00021687
gene name rarb,LOC107372434,LOC107700643,LOC107717720
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 25632186 ~ 25678181 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021687
ATGTCTCTTTTCACAAAAGCCGTTCGAAACGAccggaataaaaaaaagaaagaaactccAAAGCCAGAGTGCACAGAGAGCTACGAGCTGACAGCCGAGTTAGAGGATCTCATCGAGAAGATCCAGAAAGCTCATCAGGAAACGTTCCCTTCCCTCTGCCAGCTGGGCAAATACACCACGAATTCCAGTGCAGATCATCGCGTACGACTAGACCTCGGATTGTGGGACAAATTCAGCGAACTGGCCACAAAGTGCATTATCAAAATTGTGGAATTTGCAAAAAGAGTGCCTGGTTTCACAGGATTGACTATCGCTGACCAAATCACTCTTCTCAAAGCTGCCTGCCTAGACATTCTGGTAGGGGCAGAGCGCGTGATCACTCTCAAAATGGAAATCCCGGGGTCGATGCCCCCACTAATCCAGGAGATGCTGGAGAATTCAGAGGGGCAGGACGCACAAGGAGCCGAGGAGAGTCCAGACAAGACCGGCGACAGCCCCGGCTCCTCCCCCACCTCAGAGGACAGTGGCACCGCCAGCCAGCCCGACAAGGACGACAAGGACGACAAGGATGACAAGGACGACAAATAG

Function

symbol description
rarb Enables sequence-specific double-stranded DNA binding activity. Involved in embryonic digestive tract development. Located in nucleoplasm. Implicated in asbestos-related lung carcinoma; lung adenocarcinoma; lung non-small cell carcinoma; lung small cell carcinoma; and syndromic microphthalmia 12.

NR:

description
PREDICTED: retinoic acid receptor beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021687 True 588 mRNA 0.52 4 25632186 25678181

Neighbor

gene id symbol gene type direction distance location
AMCG00021688 NA coding upstream 16921 25592537 ~ 25615265 (+)
AMCG00021683 NA coding upstream 199579 25418820 ~ 25432607 (+)
AMCG00021684 rpl15 coding upstream 217038 25412945 ~ 25415148 (+)
AMCG00021685 NA coding upstream 226084 25384796 ~ 25406102 (+)
AMCG00021678 kat2b,LOC106588888,LOC106570503 coding upstream 624456 24987477 ~ 25007730 (+)
AMCG00021689 NA coding downstream 36403 25714584 ~ 25716586 (+)
AMCG00021694 LOC108441798,LOC107698647 coding downstream 125244 25803425 ~ 25832384 (+)
AMCG00021697 NA coding downstream 244021 25922202 ~ 25943386 (+)
AMCG00021704 NA coding downstream 442670 26120851 ~ 26121836 (+)
AMCG00021702 LOC106588954,LOC103026965,LOC106570445,LOC102291972 coding downstream 452301 26130482 ~ 26148080 (+)
G87704 NA non-coding upstream 102601 25529324 ~ 25529585 (+)
G87525 NA non-coding upstream 1271277 24359504 ~ 24360909 (+)
G87482 NA non-coding upstream 1370569 24260962 ~ 24261617 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding upstream 1413362 24216374 ~ 24218824 (+)
G87423 LOC103376870 non-coding upstream 1492678 24080736 ~ 24139508 (+)
G87765 NA non-coding downstream 154273 25832454 ~ 25832988 (+)
G87786 NA non-coding downstream 207265 25885446 ~ 25885703 (+)
G87824 NA non-coding downstream 412995 26091176 ~ 26094196 (+)
G87939 NA non-coding downstream 1032036 26710217 ~ 26713476 (+)
G87942 NA non-coding downstream 1042728 26720909 ~ 26737883 (+)
AMCG00021682 NA other upstream 259847 25276776 ~ 25372339 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other upstream 683086 24909884 ~ 24949100 (+)
AMCG00021657 NA other upstream 1433359 24183208 ~ 24198827 (+)
AMCG00021656 NA other upstream 1454094 24174403 ~ 24178092 (+)
AMCG00021602 NA other upstream 2921042 22697164 ~ 22711144 (+)
AMCG00021692 NA other downstream 74176 25752357 ~ 25753253 (+)
AMCG00021693 NA other downstream 165513 25843694 ~ 25870195 (+)
AMCG00021703 galnt12 other downstream 473887 26152068 ~ 26197076 (+)
AMCG00021707 NA other downstream 856912 26535093 ~ 26569148 (+)
AMCG00021745 NA other downstream 1954734 27632915 ~ 27637084 (+)

Expression


Co-expression Network