AMCG00021656


Basic Information

Item Value
gene id AMCG00021656
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24174403 ~ 24178092 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021656
ATGAAGGTGTGCAGGGTGCATTGTCCTGTGCTGGCAACACAGTTTCTGAGCCGCTTGGAAACAGGTGGCGCCGCCCACACCTGCGCACTGAGCCCGCCTGCGCGCTTCGGGAGCCGGGTGACGTTTGCAGGAGGTATAGCAAAGCCCCGCAGTTCAGGGATGGCAGAGAGAAACGGCTGGTGGAAATCCATTACAACGAGGAAGAAGAAGGAGTCGGTGGTCCAGCATGAGGGGGGTCCCGAGCCGCCGCTGGACAAGAGCCCGGCTGCGCTCATCTCCGACTCGCAGGAGAACCAGCCGCCCAACCAGAGGACCGAGCCGGACTTTGACGAGCAGAAACTGGACCCGGCGCTCAACGACAAGACTTTCCGCAGGAATCTGAAAATCTCCCGATCCGGCCGGTTCAAGGAGAAGAGGAAAGTGCGCGCAACATTGCCGGAGAACAACAACTTCTACGAAGGCAGCAGCCCTGGAGTCACTGAAGACCTGCACTGACGCCATGACTTTCACTCGGGATGGATGTGGGACATGTTGGACGTGGGGCCCTCATGTGGGATTTCATTGTCAATGGAAGACCTAAATAGTTAATGAAAGCaatcattacatatttatttcggATCAGGTCAGATCATGCTAGGGGCGTATATTGGGCAGTGTCGTTCCACTGCGTGTTCAGATTGGATTGTTCTGACTCAGAGCTGGTGCAGATGACgtgcaatgtgtgtttttgaattGGGATGCTACATTGGGAAGATACTGGTTTTACACATGTTGTAGCCTTGGCATTTAATTCAGGTCTAATTGATTTGTTCTTAAAAGAATATCCACATTCGAATATCAAgcacttttttggggggaaggatttatcattatttttgaagGGTGAGGTTTCTTTCATTGGGCGACCTAAGCAGAATTGCACTATATGTCCAATGAAGAAATGTATACAAGGACGGAATATATTGAATGAATAATATATCCAATTCCTAGAATGAAGAGTTCAGTATAAAACAGCTGCTCAGGTGTCGTATTGTTAAGCAAGCAAGTATGTTGTTCAGAGACTGCTAAGCATTATTAAGGAATTATACTGTCATCagtcaaggttttttttttatttttatgtttgcatattattaatattaggtTGTATcatatgtgttttaatttttttaaataattactattGACATGCTGTGTAGTTGTTTTTTATACCAATGGgatttacatttgtttgggATGGGTTGAAGaccatacataataataatgttaataatcatcattttaaaactagTGACACAAAGTAACAAACACTGGTGACCTGGCAAAACATACCCCATATGCAATCGGTGTAATCCTTGGTgagatttaatacaaaaaatttaGCAGTGAAGCAGTAATTTGACCTTTAACACCATGAATTCCAGAATTGAAGTGGTCTTATaggtatatttaaatcattaatgGGTGGTACGTGGATCTGCCCAACTATAGTAGCAGGAATCCTTTAAAGTCCAAAGCTCCCAAATAAATCATGTAATGTTCATTGCTGTTGCTTCTGCACATAATGCTGACACCCTGGATTGTTCTAGAAGTAAGGGTGGCCTTTTCTATGCCCAGCAGTGCTCTTCAATTTTATATCTCAGCTAACCATTTTTGcctgcaaatgaaaatgaaggaaCTGTTACCTGCTGCAGATTGAAGGATGTTTATTAGGTATGGGTGCTGTGTTTATGACTGGGGGGTGAAAACGATTTGGATCTGTTGTTTATGTGAAGAATTGTTGTGACTTTACATATGCTGTTGttcatttagtttgttttgcagaGATTGTTTGGCAATGATATAGAATTGCGCAGttggatttaaatatttttataccaCATTAAAAGTCACACAGGGTAAATATGactcaattatattttataaattatatttttgctgCACATGATATTTTCAGATCAATTCAGAGCCAAGGGCAGCCCCATCAatcttgttttttgtatcaATTAAGGGCAATTTCAATCTTCATGCAATGTGTTTCTAATAGCTAGAGAGGTAGAAGAGTTCACATTagaaaatgagaagaaaagtCTAGAATCTGATGGATTGATTGGGGACTTTCTTACCTCAATGAATCATCAGTTATTTAAAAGTCACATGATAAGGGCTATATTATGCCTTGACATGTTTCCAGTGTGTTTGAAGATGGCGTTGAAGTATGTGAAAGTGCTGTTTTGAACATTAGGTGGTTtcataagtatattttaataagactTGGAATTAATCAGTGAAGGCATACAGTCCCTATAATATCACTGACGTTCTGCAAACCCTTGGAGCAACAATACGaccaaataatacacattatgaATGTAAAATTGAATCCTATTAAACTTAAAAAGGATGGCCATTGAAGGTTCAtcattgtcaataataaaacattgtattcacTTCTACATGGCACATGGCTTTCTTTGTGAGGGGAAATCTAATATTTGATTGTATTGAAGGTGTTTGGAAGCTAATCTCTTTGAAGGGCAA
>TU109135
TCGGGAGCCGGGTGACGTTTGCAGGAGGTGCGTTATCTGCGCACCTGACAGGTACAGGAGGAATCTGGCCCGTCcgctccagcagcagcaacccAGTCCATCAACTTGCTTTCCACCAGGACGTGTTGTTGCATGGGGCGCTGGATCTGAGCTCTGTGGGAAACGGGACCTGAAGTGCATTTAGTCTCTGAAGCATCATGTCTGTGTTTCTCAGCGCTGGACAGGTGCGCGTCTAAACCAGGTCCAGCTTGGGAAGGACAAGAGAGCCTTTCGGCGACTGGCACGCCTCTGGGGACCGTTTGATCTACTTCACATTTGACAGAAAACGAACTTAAATCCGAAACATGGATTAACAAAGGAGGAGAacaggggggggggaaataacgTGTTGTCGGTGTCCTGGGCTTGTCTTCTGTGGAGGACAGGTGTGAATATCATCAGGTATAGCAAAGCCCCGCAGTTCAGGGATGGCAGAGAGAAACGGCTGGTGGAAATCCATTACAACGAGGAAGAAGAAGGAGTCGGTGGTCCAGCATGAGGGGGGTCCCGAGCCGCCGCTGGACAAGAGCCCGGCTGCGCTCATCTCCGACTCGCAGGAGAACCAGCCGCCCAACCAGAGGACCGAGCCGGACTTTGACGAGCAGAAACTGGACCCGGCGCTCAACGACAAGACTTTCCGCAGGAATCTGAAAATCTCCCGATCCGGCCGGTTCAAGGAGAAGAGGAAAGTGCGCGCAACATTGCCGGAGAACAACAACTTCTACGAAGGCAGCAGCCCTGGAGTCACTGAAGACCTGCACTGACGCCATGACTTTCACTCGGGATGGATGTGGGACATGTTGGACGTGGGGCCCTCATGTGGGATTTCATTGTCAATGGAAGACCTAAATAGTTAATGAAAGCaatcattacatatttatttcggATCAGGTCAGATCATGCTAGGGGCGTATATTGGGCAGTGTCGTTCCACTGCGTGTTCAGATTGGATTGTTCTGACTCAGAGCTGGTGCAGATGACgtgcaatgtgtgtttttgaattGGGATGCTACATTGGGAAGATACTGGTTTTACACATGTTGTAGCCTTGGCATTTAATTCAGGTCTAATTGATTTGTTCTTAAAAGAATATCCACATTCGAATATCAAgcacttttttggggggaaggatttatcattatttttgaagGGTGAGGTTTCTTTCATTGGGCGACCTAAGCAGAATTGCACTATATGTCCAATGAAGAAATGTATACAAGGACGGAATATATTGAATGAATAATATATCCAATTCCTAGAATGAAGAGTTCAGTATAAAACAGCTGCTCAGGTGTCGTATTGTTAAGCAAGCAAGTATGTTGTTCAGAGACTGCTAAGCATTATTAAGGAATTATACTGTCATCagtcaaggttttttttttatttttatgtttgcatattattaatattaggtTGTATcatatgtgttttaatttttttaaataattactattGACATGCTGTGTAGTTGTTTTTTATACCAATGGgatttacatttgtttgggATGGGTTGAAGaccatacataataataatgttaataatcatcattttaaaactagTGACACAAAGTAACAAACACTGGTGACCTGGCAAAACATACCCCATATGCAATCGGTGTAATCCTTGGTgagatttaatacaaaaaatttaGCAGTGAAGCAGTAATTTGACCTTTAACACCATGAATTCCAGAATTGAAGTGGTCTTATaggtatatttaaatcattaatgGGTGGTACGTGGATCTGCCCAACTATAGTAGCAGGAATCCTTTAAAGTCCAAAGCTCCCAAATAAATCATGTAATGTTCATTGCTGTTGCTTCTGCACATAATGCTGACACCCTGGATTGTTCTAGAAGTAAGGGTGGCCTTTTCTATGCCCAGCAGTGCTCTTCAATTTTATATCTCAGCTAACCATTTTTGcctgcaaatgaaaatgaaggaaCTGTTACCTGCTGCAGATTGAAGGATGTTTATTAGGTATGGGTGCTGTGTTTATGACTGGGGGGTGAAAACGATTTGGATCTGTTGTTTATGTGAAGAATTGTTGTGACTTTACATATGCTGTTGttcatttagtttgttttgcagaGATTGTTTGGCAATGATATAGAATTGCGCAGttggatttaaatatttttataccaCATTAAAAGTCACACAGGGTAAATATGactcaattatattttataaattatatttttgctgCACATGATATTTTCAGATCAATTCAGAGCCAAGGGCAGCCCCATCAatcttgttttttgtatcaATTAAGGGCAATTTCAATCTTCATGCAATGTGTTTCTAATAGCTAGAGAGGTAGAAGAGTTCACATTagaaaatgagaagaaaagtCTAGAATCTGATGGATTGATTGGGGACTTTCTTACCTCAATGAATCATCAGTTATTTAAAAGTCACATGATAAGGGCTATATTATGCCTTGACATGTTTCCAGTGTGTTTGAAGATGGCGTTGAAGTATGTGAAAGTGCTGTTTTGAACATTAGGTGGTTtcataagtatattttaataagactTGGAATTAATCAGTGAAGGCATACAGTCCCTATAATATCACTGACGTTCTGCAAACCCTTGGAGCAACAATACGaccaaataatacacattatgaATGTAAAATTGAATCCTATTAAACTTAAAAAGGATGGCCATTGAAGGTTCAtcattgtcaataataaaa

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021656 False 2541 mRNA 0.40 2 24174403 24178092
TU109135 True 2747 TUCP 0.41 2 24174509 24177990

Neighbor

gene id symbol gene type direction distance location
AMCG00021654 chn2,LOC107684543,LOC107550834,LOC107745376 coding upstream 1522 24152064 ~ 24172881 (+)
AMCG00021655 chn2,LOC107685541,LOC107745376,LOC107550834,LOC107596649 coding upstream 39356 24128999 ~ 24135047 (+)
AMCG00021651 LOC106537063,LOC106517749 coding upstream 144830 24020865 ~ 24029573 (+)
AMCG00021648 creb5,LOC107550799 coding upstream 200224 23955929 ~ 23974179 (+)
AMCG00021645 NA coding upstream 291251 23853919 ~ 23883152 (+)
AMCG00021658 LOC106574036,LOC103150415 coding downstream 42829 24220921 ~ 24232757 (+)
AMCG00021659 NA coding downstream 96003 24274095 ~ 24276540 (+)
AMCG00021665 NA coding downstream 164760 24342852 ~ 24353253 (+)
AMCG00021664 NA coding downstream 193775 24371867 ~ 24377488 (+)
AMCG00021671 NA coding downstream 266215 24444307 ~ 24457362 (+)
G87423 LOC103376870 non-coding upstream 34895 24080736 ~ 24139508 (+)
G87402 NA non-coding upstream 142286 24029844 ~ 24032117 (+)
G87321 NA non-coding upstream 482255 23687325 ~ 23692148 (+)
G87313 hoxa3 non-coding upstream 495800 23673892 ~ 23678603 (+)
G87288 NA non-coding upstream 590067 23489081 ~ 23584336 (+)
G87464 fkbp14,LOC107685615,LOC107596753,LOC107743226,LOC107550815 non-coding downstream 38282 24216374 ~ 24218824 (+)
G87482 NA non-coding downstream 82870 24260962 ~ 24261617 (+)
G87525 NA non-coding downstream 181412 24359504 ~ 24360909 (+)
G87704 NA non-coding downstream 1351232 25529324 ~ 25529585 (+)
G87765 NA non-coding downstream 1654362 25832454 ~ 25832988 (+)
AMCG00021602 NA other upstream 1463259 22697164 ~ 22711144 (+)
AMCG00021591 NA other upstream 1883262 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 2917214 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 2938323 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 2941550 21229852 ~ 21232853 (+)
AMCG00021657 NA other downstream 5116 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 731792 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 1098684 25276776 ~ 25372339 (+)
AMCG00021692 NA other downstream 1574265 25752357 ~ 25753253 (+)
AMCG00021693 NA other downstream 1665602 25843694 ~ 25870195 (+)

Expression


Co-expression Network