AMCG00021591


Basic Information

Item Value
gene id AMCG00021591
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22270871 ~ 22291141 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021591
ATGTGTCCTCTTCGTGCGGCGCGTCCCGCCTCGCGCTTCTTTCGCGCCGTTTTTCTCTTCGCTTTCGCGCCATTTGCGGCTGAAAATCCGGACGACGGAGGAGGAGCAGCTCCGCGATCGCGCATGGCGGACCTGACTGCAGTGACGCCGGCATCACACTGCATGCACTCGCAAACAGGATCCCGACCTCAGAAGACCCTTGTTTACATCGGAAGAAAGAGGTTCGATTTCCAAGGGAATCGGACCGAGGACAGTGATGCGAATCCCCAATACCTGTTCTTCTCCGCTGTGTGTGGTCTGTCCGTGGTGGCCATTGTCGTGCTGAAGACGGTTCCTCCCAGCAGGGGACTGAGAGGCAGGGGCAGGGGGCGAGAGGCAGGGACTGGGACAGGCAGTAGCTCGCCTCTCGGCGGACTGCCAGCTCGATCCCAAGATCCAACTATGAGCTTTTTAACAACTTTAATATATGCTATTGGAGCTGGAATTACCACACCAGACTTGCCCTCCAATGGATCCTTGTTAATGGATTTAAAGTGTACTCATTCCAATTACAGGGCCTCGAACTCTGATTCCCTGTTACCCATGGTCACTACGGCCACCCTGTCCCAGCGCAGGGACTCCTGGGCTGTGATGGCAGTGTGGCTCCTTCAGAGCTGTCCAGCTGACGACACACTGAGCCAGACCCCAAGCCCTGCCCACAGCACTCTGCCTCCTCATTTCAGCCCTGCAGGACCCACGTCACCCggtctccccctctccccgcaTTAA
>TU108605
cggacatctgcgctacacgtaCGTGACCTGTAAATGCCCAGGCCCGTGTTTGTGGACCTTTTATCCGGgtggatcacgcgtgtttcCGGCTGTGTCGGAGCTCCCCACGACACAGGGCTTCAGATCAGTCGGGCCACAGAGAGATGAAGACCAAACTTTGACCTCACCACCGGCAGTAGCGCGTTTGGGTTACTGGATCAGGCAGGGCGAACAGGTTCGATTTCCAAGGGAATCGGACCGAGGACAGTGATGCGAATCCCCAATACCTGTTCTTCTCCGCTGTGTGTGGTCTGTCCGTGGTGGCCATTGTCGTGCTGAAGACGGTGTGAGGCCACGTGTTTGTCAAGTTCCAGCTGGTCAATCCTTTGCTTTTGATCCTCAGCGGCTTCAAGATTTCCTTCTTCCTGGAGTCTTcaaatgaatataaaacaaaaaagaaaaaacatagcTTGAGGAAGTACTTCTGTACTCAAAGCTTATTTCGTTGCTAAGGGATGTCAAAACACACTAAGGAGGATGGAGAAACGCATGCTTTTCCTGCATGGTAAGGATACAGGCTCGCTGAACCATTTTGGAAGACTTGCAAAGTGTTGAAATCTCATCTGACCACTTTGTCATGCAAAGGAAGGCTGGTGTGACCAGTGTTTCGATTTACATTCATCAGTGTAATCATCCGGTAGAGTGCATAATGGCTTCTCAAATGAGACCTTATATTGCTTCCAACTAAGAACGGCCATGCACCACCACTCACAGAATCGAGAGAGCTATCAATCTGTCAATCCTTTCCGTGTCCGGGACGGGTGAGGTTTCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCCTCCGTCCATTCCTTTAAGTTTCAGGTTTGCAATCATACTCCCCACGGAACCCAAAGACTTTTGGATTTTACCTGCTCTGCTACGAAACGAAAGCCTTTGTCCTCTTTGTCACACTCGAAGGTTCCTCCCAGCAGGGGACTGAGAGGCAGGGGCAGGGGGCGAGAGGCAGGGACTGGGACAGGCAGTAGCTCGCCTCTCGGCGGACTGCCAGCTCGATCCCAAGATCCAACTATGAGCTTTTTAACAACTTTAATATATGCTATTGGAGCTGGAATTACCACACCAGACTTGCCCTCCAATGGATCCTTGTTAATGGATTTAAAGTGTACTCATTCCAATTACAGGGCCTCGAACTC

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021591 False 768 mRNA 0.57 4 22270871 22291141
TU108605 True 1214 lncRNA 0.50 5 22271537 22281458

Neighbor

gene id symbol gene type direction distance location
AMCG00021584 bzw2,LOC107702135 coding upstream 5681 22248251 ~ 22265190 (+)
AMCG00021585 NA coding upstream 33495 22235978 ~ 22237376 (+)
AMCG00021575 arl4a,LOC103358889,LOC104928894 coding upstream 368818 21899896 ~ 21902053 (+)
AMCG00021574 NA coding upstream 373842 21878156 ~ 21897029 (+)
AMCG00021573 NA coding upstream 398803 21870653 ~ 21872068 (+)
AMCG00021590 tspan13,LOC105012392,LOC108433833,LOC106588709,LOC107562755 coding downstream 2623 22293764 ~ 22301168 (+)
AMCG00021593 NA coding downstream 89109 22380250 ~ 22390591 (+)
AMCG00021595 NA coding downstream 213004 22504145 ~ 22526873 (+)
AMCG00021596 NA coding downstream 249781 22540922 ~ 22575847 (+)
AMCG00021604 NA coding downstream 541894 22833035 ~ 22839518 (+)
G86905 NA non-coding upstream 632355 21638276 ~ 21638516 (+)
G86892 NA non-coding upstream 754628 21516033 ~ 21516243 (+)
G86884 NA non-coding upstream 973091 21295531 ~ 21297780 (+)
G86859 NA non-coding upstream 1032708 21237101 ~ 21238163 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 1095212 21172090 ~ 21175659 (+)
G87030 agr2 non-coding downstream 12425 22303566 ~ 22306888 (+)
G87086 twist1 non-coding downstream 296073 22587214 ~ 22588925 (+)
G87091 NA non-coding downstream 337479 22628620 ~ 22628886 (+)
G87168 NA non-coding downstream 716253 23007394 ~ 23014831 (+)
G87215 NA non-coding downstream 853863 23145004 ~ 23191753 (+)
AMCG00021560 NA other upstream 1013682 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 1034791 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 1038018 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 1105371 21158624 ~ 21165500 (+)
AMCG00021550 NA other upstream 1161503 21098419 ~ 21109368 (+)
AMCG00021602 NA other downstream 406023 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 1883262 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 1892067 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 2618743 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 2985635 25276776 ~ 25372339 (+)

Expression


Co-expression Network