G86884


Basic Information

Item Value
gene id G86884
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21295531 ~ 21297780 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU108445
tatatataaatataatgatatttgtttacaaattgCTATCAAATCAGGAATTCTGGTCATGTTTTGGCTGcatcatattaatttaatatacacttaataaaatagttattaatacacattataaaccataagaaattaaaatcaaagatACATTTAATGGCAGGCAAAACTCATTTAAAGAATGATACAGCTTCAGATGAAAATGTCCATCACATGGGTGTATaggagaaattaaatgcatttttggcATAGTGTTgacatgattaaataattattactcTTAATATGTATATCCTGTATATCCACATATTCACATCTCTTTAATAATATTGGCTCGAAATGCATCCTTCGAGTATTACAAACCTGCTAATTGACAGTTGGTGTTAAGCTGACATCAATGTGAATGTACACGAGACTATTCTAAAACTTCTTCTGattttactgttaaaaaaagtaatgagCCTAAAGCAAACTTACTGTATCAATGCGagctaaaaaactaaaactataatCCATGCTTTTGGACATGCAGGAGGATTTGGTATTTATCACAACCTCTTGTTCACGTCTGAAACCCAAAAAGACTAGTTGTTCATGTAGGCACTGTTGTGGGACATTGTGGATTTAATGTCTTGAAGATTGGGCAGTTTTATTAATGAAGTGCATTTGATCTTTATACTGAATATCCTCAAAGTAAACCCACAGACAAAGTTCCTAGATCTACAATACAGTCAGTTCAGCTCATGTAAATTAGGGTCTTAAAGAATGGTTCCCCGTCGCGTCCCCCAGCTCTGCGTTGTGAATTCAAGTCTACTAGCATGTGTGTTAACAAACGCACacgaaataaattaattaaaaacagaaagtgtGCAGTTAAGATGCACACATACAAACCTAACCTGCCGTCAGTTTGAGATCTAAGGAGCTATAACTTCCTTATCCTTATCTGAACATTAGGTTTGAACTTTAAGAAGGCGCTGCTTTAGAAACTATAACAGCAGCTCAATATAACTGACCAGGCCTGACGGACAGTGATGTCACACTCGCTCGTCTCCATCATCGATGTCAACGGCACTGAATTTCTCTCACACGAGGGGAGCCGACAGCCGGCCTACATCAACGCAAAGCAGGGGAACAGTATCGAGAGACAAGAAATGTATAATAGTGCagacaaacttaaaaagcaaattaaatgcttacgtttttgtttgtgcttgtggggggttgtttttcatcttttaaaaaacaggtgCTAAATTGTACACGATGATAAAGATTTATGAATATGGGCATGCATGTCTTTTGACAAATATACAGGCAACAGGGTGAGAAGAACAGATTCTGCCTGTTCTGATATTCGGTGGTGAAACTCTGAAACAGTTTTGGGATGGGGGGTGAAGTGTGCTTTTCTCTACAGATCtccaaaacaaagacacaatgGCTTTTGTGGATGTCCAGTCATCAGTGATGCAACACCTGGATGGCACATCAAAAGTTTCCAAGCAATACAGGAAGTTGGATACGATGTTTCATTTGGCACTGGAAATACACTCAGAATTGTGCAtctgctctccctccctcagaacatgtattttatgaCATAACAGGTTTGACTAATGACCTTTATCTGTGTACAAATGATAAGACCCTCTATATCTTCAGCAGGAGCGGTACTTTTTTAAGTGACATGACATCAAAGATAGAGTTTTACCCTCCATCCCTCCTACAGCAAACACGGACATGGCAAGAACCGAGAGAGGAGGTCATGCGTTGAGCAGCTCGTGCTCTCGGTCAGTCCTGCCCACCGCGTCCGGGTTCGACAGCGGATCCAGGTCTGCGAACAGGTTGAACCAAGCCGACAGGTCTTTAGCCGGTTTGGGGGTTTCTAGAAGTACAAGGGAGATGCTGAGTTAACATTCATATAGGACTGGCACACAGTCACTTTTGCAGGACAGACATCTAATTTATTCCTCTCTAGATTGCTCTCTCCTCCTTAGAAGGTTCTCATCAAGGTCTCtgccagtgtgtttttttttggaaatacattCTGGCAGACCACCCTGCCAAAGTCATGCTGCCTTGTAGTGCTTCATCAGAGAGGCATCAAAAAACATTTAGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108445 True 2122 lncRNA 0.39 2 21295531 21297780

Neighbor

gene id symbol gene type direction distance location
AMCG00021563 NA coding upstream 4439 21269203 ~ 21291092 (+)
AMCG00021556 NA coding upstream 100929 21192962 ~ 21194602 (+)
AMCG00021555 NA coding upstream 102774 21180802 ~ 21192757 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding upstream 214846 21077945 ~ 21080685 (+)
AMCG00021543 dync1i1 coding upstream 314906 20957229 ~ 20980625 (+)
AMCG00021565 LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956 coding downstream 62388 21360168 ~ 21361602 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding downstream 276270 21574050 ~ 21605063 (+)
AMCG00021567 NA coding downstream 359762 21657542 ~ 21659873 (+)
AMCG00021570 tmem106b,LOC107584266,LOC107724356,LOC107709260,LOC107696205,LOC107702131,LOC108425340,LOC103043314 coding downstream 517190 21814970 ~ 21828220 (+)
AMCG00021571 NA coding downstream 535043 21832823 ~ 21834923 (+)
G86859 NA non-coding upstream 57368 21237101 ~ 21238163 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 119872 21172090 ~ 21175659 (+)
G86800 NA non-coding upstream 257106 21035102 ~ 21038425 (+)
G86727 NA non-coding upstream 392676 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 593074 20699214 ~ 20702457 (+)
G86892 NA non-coding downstream 218253 21516033 ~ 21516243 (+)
G86905 NA non-coding downstream 340496 21638276 ~ 21638516 (+)
G87030 agr2 non-coding downstream 1005786 22303566 ~ 22306888 (+)
G87086 twist1 non-coding downstream 1289434 22587214 ~ 22588925 (+)
G87091 NA non-coding downstream 1330840 22628620 ~ 22628886 (+)
AMCG00021560 NA other upstream 38342 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 59451 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 62678 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 130031 21158624 ~ 21165500 (+)
AMCG00021550 NA other upstream 186163 21098419 ~ 21109368 (+)
AMCG00021591 NA other downstream 973091 22270871 ~ 22291141 (+)
AMCG00021602 NA other downstream 1399384 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 2876623 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 2885428 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 3612104 24909884 ~ 24949100 (+)

Expression


Co-expression Network