AMCG00021565 (LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956)


Basic Information

Item Value
gene id AMCG00021565
gene name LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21360168 ~ 21361602 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021565
ATGTCCTGTGAGGTCTCATGTGCTCATGCCAGCAACCCAGGGAAGTCAGATCTTCTTAAATCAGGAAGCCCCAAATCGACCTTAAAACACATATGGACAGAAAGCAGTAAAGACTTGTCCATCAGTCGACTGCTGTCACAGACTCTACACGGCAAGGAAAATGCCACGGCTTTGGACCTGCGGTACGATACCCCGGAGCCTTACTCCGAGCAGGACCTCTGGGATTGGCTGCGAAACTCCACAGACCTCCAGGAGCCGCGGCCCCGGGCCAAGAGACGTCCGATTGTCAAAACGGGGAAGTTTAAGAAAATGTTCGGTTGGGGGGATTTTCATTCCAACATTAAAACTGTCAAGCTGAACCTGCTGATAACCGGCAAGATTGTGGATCACGGGAACGGGACCTTCAGCGTGTACTTTCGGCACAACTCCACCGGCCAGGGGAATGTATCCGTCAGTCTGGTGCCGCCCACCAAGATCGTCGAATTCGACCTGGCGCAGCAGACTGTGATCGACGCCAAAGATTCGAAATCGTTCAACTGCCGGATCGAGTACGAGAAGGTGGACAAGGCCACGAAGAACACGCTTTGCAACTACGACCCGTCAAAGACGTGCTATCAGGAGCAGACCCAGAGCCACGTGTCCTGGCTCTGCTCAAAGCCGTTCAAAGTCATCTGTATTTACATCTCCTTCTACAGCACCGATTATAAACTGGTGCAAAAGGTGTGCCCCGATTACAACTACCACAGCGACACGCCCTACTTCCCCTCGGGCTGA

Function

NR:

description
PREDICTED: neurexophilin-1

GO: NA

KEGG:

id description
K16656 NXPH1; neurexophilin-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021565 True 774 mRNA 0.53 2 21360168 21361602

Neighbor

gene id symbol gene type direction distance location
AMCG00021563 NA coding upstream 69076 21269203 ~ 21291092 (+)
AMCG00021556 NA coding upstream 165566 21192962 ~ 21194602 (+)
AMCG00021555 NA coding upstream 167411 21180802 ~ 21192757 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding upstream 279483 21077945 ~ 21080685 (+)
AMCG00021543 dync1i1 coding upstream 379543 20957229 ~ 20980625 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding downstream 212448 21574050 ~ 21605063 (+)
AMCG00021567 NA coding downstream 295940 21657542 ~ 21659873 (+)
AMCG00021570 tmem106b,LOC107584266,LOC107724356,LOC107709260,LOC107696205,LOC107702131,LOC108425340,LOC103043314 coding downstream 453368 21814970 ~ 21828220 (+)
AMCG00021571 NA coding downstream 471221 21832823 ~ 21834923 (+)
AMCG00021573 NA coding downstream 509051 21870653 ~ 21872068 (+)
G86884 NA non-coding upstream 62388 21295531 ~ 21297780 (+)
G86859 NA non-coding upstream 122005 21237101 ~ 21238163 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 184509 21172090 ~ 21175659 (+)
G86800 NA non-coding upstream 321743 21035102 ~ 21038425 (+)
G86727 NA non-coding upstream 457313 20901027 ~ 20902855 (+)
G86892 NA non-coding downstream 154431 21516033 ~ 21516243 (+)
G86905 NA non-coding downstream 276674 21638276 ~ 21638516 (+)
G87030 agr2 non-coding downstream 941964 22303566 ~ 22306888 (+)
G87086 twist1 non-coding downstream 1225612 22587214 ~ 22588925 (+)
G87091 NA non-coding downstream 1267018 22628620 ~ 22628886 (+)
AMCG00021560 NA other upstream 102979 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 124088 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 127315 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 194668 21158624 ~ 21165500 (+)
AMCG00021550 NA other upstream 250800 21098419 ~ 21109368 (+)
AMCG00021591 NA other downstream 909269 22270871 ~ 22291141 (+)
AMCG00021602 NA other downstream 1335562 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 2812801 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 2821606 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 3548282 24909884 ~ 24949100 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000036_00542557_00543309 NXPH2, NXPH2A coding CI01000036 null 542557 ~ 543386 (+)