RNA id: AMCG00021565


Basic Information

Item Value
RNA id AMCG00021565
length 774
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00021565
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21360168 ~ 21361602 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTGTGAGGTCTCATGTGCTCATGCCAGCAACCCAGGGAAGTCAGATCTTCTTAAATCAGGAAGCCCCAAATCGACCTTAAAACACATATGGACAGAAAGCAGTAAAGACTTGTCCATCAGTCGACTGCTGTCACAGACTCTACACGGCAAGGAAAATGCCACGGCTTTGGACCTGCGGTACGATACCCCGGAGCCTTACTCCGAGCAGGACCTCTGGGATTGGCTGCGAAACTCCACAGACCTCCAGGAGCCGCGGCCCCGGGCCAAGAGACGTCCGATTGTCAAAACGGGGAAGTTTAAGAAAATGTTCGGTTGGGGGGATTTTCATTCCAACATTAAAACTGTCAAGCTGAACCTGCTGATAACCGGCAAGATTGTGGATCACGGGAACGGGACCTTCAGCGTGTACTTTCGGCACAACTCCACCGGCCAGGGGAATGTATCCGTCAGTCTGGTGCCGCCCACCAAGATCGTCGAATTCGACCTGGCGCAGCAGACTGTGATCGACGCCAAAGATTCGAAATCGTTCAACTGCCGGATCGAGTACGAGAAGGTGGACAAGGCCACGAAGAACACGCTTTGCAACTACGACCCGTCAAAGACGTGCTATCAGGAGCAGACCCAGAGCCACGTGTCCTGGCTCTGCTCAAAGCCGTTCAAAGTCATCTGTATTTACATCTCCTTCTACAGCACCGATTATAAACTGGTGCAAAAGGTGTGCCCCGATTACAACTACCACAGCGACACGCCCTACTTCCCCTCGGGCTGA

Function

GO: NA

KEGG:

id description
K16656 NXPH1; neurexophilin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108445 lncRNA upstream 62388 21295531 ~ 21297780 (+) True G86884
TU108424 lncRNA upstream 102979 21241666 ~ 21257189 (+) True AMCG00021560
TU108425 lncRNA upstream 117151 21241666 ~ 21243017 (+) False AMCG00021560
TU108418 lncRNA upstream 122005 21237101 ~ 21238163 (+) True G86859
TU108380 lncRNA upstream 184509 21172090 ~ 21175659 (+) True G86833
TU108454 lncRNA downstream 154431 21516033 ~ 21516243 (+) True G86892
TU108467 lncRNA downstream 276674 21638276 ~ 21638516 (+) True G86905
TU108605 lncRNA downstream 909935 22271537 ~ 22281458 (+) True AMCG00021591
TU108617 lncRNA downstream 941964 22303566 ~ 22306888 (+) True G87030
TU108691 lncRNA downstream 1225612 22587214 ~ 22588925 (+) True G87086
AMCG00021563 mRNA upstream 69076 21269203 ~ 21291092 (+) True AMCG00021563
AMCG00021560 mRNA upstream 104973 21254899 ~ 21255195 (+) False AMCG00021560
AMCG00021561 mRNA upstream 127315 21230789 ~ 21232853 (+) False AMCG00021561
AMCG00021556 mRNA upstream 165566 21192962 ~ 21194602 (+) True AMCG00021556
AMCG00021555 mRNA upstream 167411 21180802 ~ 21192757 (+) True AMCG00021555
AMCG00021566 mRNA downstream 212448 21574050 ~ 21605063 (+) True AMCG00021566
AMCG00021567 mRNA downstream 295940 21657542 ~ 21659873 (+) True AMCG00021567
AMCG00021570 mRNA downstream 453368 21814970 ~ 21828220 (+) True AMCG00021570
AMCG00021571 mRNA downstream 471221 21832823 ~ 21834923 (+) True AMCG00021571
AMCG00021573 mRNA downstream 509051 21870653 ~ 21872068 (+) True AMCG00021573
TU108421 other upstream 124088 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 128680 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 128680 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 195136 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 250800 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 2812907 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 3915174 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 4790466 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 7416713 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 7699285 29060887 ~ 29065339 (+) True G88276

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000036_00542557_00543309.mRNA True 830 mRNA 0.51 1 CI01000036 542557 ~ 543386 (+)