RNA id: CI01000036_00542557_00543309.mRNA


Basic Information

Item Value
RNA id CI01000036_00542557_00543309.mRNA
length 830
RNA type mRNA
GC content 0.51
exon number 1
gene id CI01000036_00542557_00543309
representative True

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 542557 ~ 543386 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTGTTGGAAGGTCACATGCAGAAGAGTCCATATTCCAGAGATGGGGCTTGTGGACTGGGGAGAAAACGAGGAGCACCCCTCCCCCAAAAGCGCCAGCCCCCGTGTTCTCAACCCCCTGCGCCTTTTCGCCCGGGGATCCCCTGGGTTCAAGAGCAACAGGAGGGAGATTACATATTTGGAAAACATCGAGGACTCCTGGGACTGGTTATCTAACCAGACAGATGTCAGAGAGTCGCAGAGCAGGACTAAACGCAGACCCATCGTGAAAACGGGCAAGTTTAAAAAAATGTTCGGCTGGGGTGACTTCAACTCCAACATCAAGACTGTGAAACTAAATCTCCTCATTACAGGCAAGATAGTGGACCACGGCAACGGCACGTTTAGCGTTTACTTCCGTCATAATTCCACGGGCCTGGGGAACGTCTCTGTAAGCCTGGTGCCGCCTTCCAAGGTGGTGGAGTTTGAGATCGCCCAGCAGTCCACCCTGGAGACGAAAGACTCAAAATCTTTCAACTGCCGGATCGAGTACCAGAAAACGGACCGCAGCAAAAAGACTTCACACTGCAGCTATGACCCGTCCAACGTGTGTTACCAAGAGTCCACCCAGAGCCACGTGTCCTGGCTCTGCTCGAAGCCCTTCAAAGTCATATGCATCTACATCGCCTTTTACAGCACTGACTATAAACTGGTGCAGAAAATCTGCCCAGATTACAACTACCACAGCGACACGCCGTACGCTTCCACGGGTTAAGATCCGGTCCATCCTCCACAGTGAGAATGGTCAACCTCATTTTCACCATGTGTTCATCTGATTTAGAAGCAATTAAA

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K16657 NXPH2; neurexophilin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196750 lncRNA upstream 24510 517543 ~ 518047 (+) True G173197
TU196707 lncRNA upstream 26420 515080 ~ 516137 (+) True G173155
TU196749 lncRNA upstream 29450 512857 ~ 513107 (+) True G173196
TU196699 lncRNA upstream 37826 498964 ~ 504731 (+) True G173148
TU196701 lncRNA upstream 47259 494127 ~ 495298 (+) True G173149
TU196697 lncRNA downstream 3313 546699 ~ 553330 (+) True G173147
TU196775 lncRNA downstream 37718 581104 ~ 587989 (+) True G173217
TU196805 lncRNA downstream 175567 718953 ~ 720565 (+) True G173245
TU196884 lncRNA downstream 301716 845102 ~ 845346 (+) True G173322
TU196885 lncRNA downstream 304502 847888 ~ 848131 (+) True G173323
CI01000036_00457595_00467133.mRNA mRNA upstream 75424 457595 ~ 467133 (+) True CI01000036_00457595_00467133
CI01000036_00322865_00441961.mRNA mRNA upstream 100596 322865 ~ 441961 (+) True CI01000036_00322865_00441961
CI01000036_00234733_00237131.mRNA mRNA upstream 305213 233732 ~ 237344 (+) True CI01000036_00234733_00237131
CI01000036_00230834_00232989.mRNA mRNA upstream 309565 229638 ~ 232992 (+) True CI01000036_00230834_00232989
CI01000036_00134824_00154438.mRNA mRNA upstream 388086 134673 ~ 154471 (+) True CI01000036_00134824_00154438
CI01000036_00947110_00948159.mRNA mRNA downstream 403724 947110 ~ 948666 (+) True CI01000036_00947110_00948159
CI01000036_00975332_00984107.mRNA mRNA downstream 431946 975332 ~ 984315 (+) True CI01000036_00975332_00984107
CI01000036_00999312_01007326.mRNA mRNA downstream 455926 999312 ~ 1007363 (+) True CI01000036_00999312_01007326
CI01000036_01140528_01239535.mRNA mRNA downstream 597142 1140528 ~ 1239535 (+) True CI01000036_01140528_01239535
CI01000036_01274853_01288632.mRNA mRNA downstream 731467 1274853 ~ 1289612 (+) True CI01000036_01274853_01288632
TU196704 other upstream 64386 475352 ~ 478171 (+) True G173152
TU196709 other downstream 36676 580062 ~ 581006 (+) True G173157
TU196889 other downstream 319909 863295 ~ 864154 (+) True G173327
TU197853 other downstream 1202966 1746352 ~ 1747188 (+) True G174214
TU197939 other downstream 1441498 1984884 ~ 2006413 (+) False G174289

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072800 True 1350 mRNA 0.49 3 NC_007120.7 10014817 ~ 10043859 (+)
bowfin (Amia calva) AMCG00021565 True 774 mRNA 0.53 2 CM030130.1 21360168 ~ 21361602 (+)