RNA id: TU196749



Basic Information


Item Value
RNA id TU196749
length 251
lncRNA type intronic
GC content 0.40
exon number 1
gene id G173196
representative True

Chromosome Information


Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 512857 ~ 513107 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GACTTGACCATGTTGTGAGGGTTGTTAAACTCATTGTGGTGTTTCACGTAGAAACCGCTCTCATGTGCTCTAATAAATAGGGCTGTCAATAAATAAAAATTTTTTAATTGTGAATAATCGCACACTTTACTATCCCATAAGGCCACGGGAGAGGATTTGTGAATGGCAGTGAAGTGACGCAACTGACGCTGGTAGGTCACATGATAATGCATGCCAGGGTGTTGCATATCCAGATTACATTTTAACTACTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU196699 lncRNA upstream 8126 498964 ~ 504731 (+) True G173148
TU196701 lncRNA upstream 17559 494127 ~ 495298 (+) True G173149
TU196742 lncRNA upstream 24946 487615 ~ 487911 (+) True G173189
TU196711 lncRNA upstream 64849 447170 ~ 448008 (+) True G173159
TU196723 lncRNA upstream 231357 281283 ~ 281500 (+) True G173171
TU196707 lncRNA downstream 1973 515080 ~ 516137 (+) True G173155
TU196750 lncRNA downstream 4436 517543 ~ 518047 (+) True G173197
TU196697 lncRNA downstream 33592 546699 ~ 553330 (+) True G173147
TU196775 lncRNA downstream 67997 581104 ~ 587989 (+) True G173217
TU196805 lncRNA downstream 205846 718953 ~ 720565 (+) True G173245
CI01000036_00457595_00467133.mRNA mRNA upstream 45724 457595 ~ 467133 (+) True CI01000036_00457595_00467133
CI01000036_00322865_00441961.mRNA mRNA upstream 70896 322865 ~ 441961 (+) True CI01000036_00322865_00441961
CI01000036_00234733_00237131.mRNA mRNA upstream 275513 233732 ~ 237344 (+) True CI01000036_00234733_00237131
CI01000036_00230834_00232989.mRNA mRNA upstream 279865 229638 ~ 232992 (+) True CI01000036_00230834_00232989
CI01000036_00134824_00154438.mRNA mRNA upstream 358386 134673 ~ 154471 (+) True CI01000036_00134824_00154438
CI01000036_00542557_00543309.mRNA mRNA downstream 29450 542557 ~ 543386 (+) True CI01000036_00542557_00543309
CI01000036_00947110_00948159.mRNA mRNA downstream 434003 947110 ~ 948666 (+) True CI01000036_00947110_00948159
CI01000036_00975332_00984107.mRNA mRNA downstream 462225 975332 ~ 984315 (+) True CI01000036_00975332_00984107
CI01000036_00999312_01007326.mRNA mRNA downstream 486205 999312 ~ 1007363 (+) True CI01000036_00999312_01007326
CI01000036_01140528_01239535.mRNA mRNA downstream 627421 1140528 ~ 1239535 (+) True CI01000036_01140528_01239535
TU196704 other upstream 34686 475352 ~ 478171 (+) True G173152
TU196709 other downstream 66955 580062 ~ 581006 (+) True G173157
TU196889 other downstream 350188 863295 ~ 864154 (+) True G173327
TU197853 other downstream 1233245 1746352 ~ 1747188 (+) True G174214
TU197939 other downstream 1471777 1984884 ~ 2006413 (+) False G174289

Expression Profile