G173197


Basic Information

Item Value
gene id G173197
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 517543 ~ 518047 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU196750
GTCCATGAGTACATACAGAACACGCATCACTGCCAATTTTCCTGACCTCCTTAGGATAACTGATGTCCAGTCATGAAGAAGCTCCATCAGCACAGCAAAGGCATGCAACATCCTTTAAATTGTCCAGGACAATCTTCTCCTTTAAAAGCACGGTCACATCAGTGATCTCCATTGGGGAAGATCATTCTCCTTTTTAACCAGTATTCATCCCTGTCACCACCAGTTCATCATTGGGTTAAAAAGAGGAAAAAGAAAATTACTAGGGAACACAAAACAAATTCTTAAAACATTTGATGGTTAAAACTGAATAATTTTCAGACAGGTGCATCCACATCATTGTGAAGTGACTCAAGAGCAGCTATGGAGATGAAGTTCATGTGGATTGTCCTCATACAGTGAGACTGCAGATGGATTAGATTAATCCATATACAGTAAATATGTCCAGAGCTTACTTTTTTAGCCATAAATTTAATTGTGATCTTGACATATCGTTTACTGCCCAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196750 True 505 lncRNA 0.39 1 517543 518047

Neighbor

gene id symbol gene type direction distance location
CI01000036_00457595_00467133 TTF2 coding upstream 50410 457595 ~ 467133 (+)
CI01000036_00322865_00441961 IGSF3 coding upstream 75582 322865 ~ 441961 (+)
CI01000036_00234733_00237131 NA coding upstream 280199 233732 ~ 237344 (+)
CI01000036_00230834_00232989 NA coding upstream 284551 229638 ~ 232992 (+)
CI01000036_00134824_00154438 RAMP1 coding upstream 363072 134673 ~ 154471 (+)
CI01000036_00542557_00543309 NXPH2, NXPH2A coding downstream 24510 542557 ~ 543386 (+)
CI01000036_00947110_00948159 CXCR4B coding downstream 429063 947110 ~ 948666 (+)
CI01000036_00975332_00984107 DARS, SYDC, DARS.L coding downstream 457285 975332 ~ 984315 (+)
CI01000036_00999312_01007326 GMPPAA, GMPPA, GMPAA coding downstream 481265 999312 ~ 1007363 (+)
CI01000036_01140528_01239535 ASIC4, ASIC4A coding downstream 622481 1140528 ~ 1239535 (+)
G173155 NA non-coding upstream 1406 515080 ~ 516137 (+)
G173196 NA non-coding upstream 4436 512857 ~ 513107 (+)
G173148 NA non-coding upstream 12812 498964 ~ 504731 (+)
G173149 NA non-coding upstream 22245 494127 ~ 495298 (+)
G173189 NA non-coding upstream 29632 487615 ~ 487911 (+)
G173147 NA non-coding downstream 28652 546699 ~ 553330 (+)
G173217 NA non-coding downstream 63057 581104 ~ 587989 (+)
G173245 NA non-coding downstream 200906 718953 ~ 720565 (+)
G173322 NA non-coding downstream 327055 845102 ~ 845346 (+)
G173323 NA non-coding downstream 329841 847888 ~ 848131 (+)
G173152 NA other upstream 39372 475352 ~ 478171 (+)
G173157 NA other downstream 62015 580062 ~ 581006 (+)
G173327 NA other downstream 345248 863295 ~ 864154 (+)
G174214 NA other downstream 1228305 1746352 ~ 1747188 (+)
G174289 NA other downstream 1466837 1984884 ~ 2006413 (+)

Expression


Co-expression Network