CI01000036_00975332_00984107 (DARS, SYDC, DARS.L)


Basic Information

Item Value
gene id CI01000036_00975332_00984107
gene name DARS, SYDC, DARS.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 975332 ~ 984315 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000036_00975332_00984107.mRNA
ACCACGACCAGCCAGGCCATCTTCCGGCTGCAGTCAGGCGTATGTCAGCTCTTCAGAGACACGCTCATCAACAAGGGCTTTGTGGAGATTCAGACCCCCAAGATCATCTCTGCTGCCAGTGAGGGTGGTGCAAATGTCTTCACCGTCTCATACTTCAAGACCAGTGCGTACCTGGCCCAGTCCCCTCAGCTCTACAAGCAAATGTGCATTTGTGCTGACTTTGACAAAGTCTTCTGTGTTGGACCAGTGTTCAGGGCTGAGGATTCCAACACTCATCGCCACCTGACGGAGTTTGTGGGTCTGGATATTGAAATGGCTTTCAATTACCATTACCATGAGGTTATTGACTCCATTACTGACACCATGGTTCAGATCTTTAAAGGACTACGTGACCGGTTCCAGACAGAGATCCAGACCGTGAATAAGCAGTACCCCAGTGAGCCGTTCAAGTTCCTGGAGCCCACGCTGAGACTGGAGTATAAGGAGGGAGTGGCCATGCTCAGAGCTGCTGGGGTGGAAATGGGGGATGAAGAAGATTTGAGCACACCCAATGAAAAGCTGCTTGGTCGTCTAGTGAAGGAGAAGTATGACACTGACTTCTATGTTCTGGACAAATACCCCTTGGCAGTAAGGCCGTTCTACACCATGCCTGACCCCAACAATCCAAAATATTCCAACTCATATGATATGTTCATGAGAGGAGAGGAGATCCTGTCCGGAGCTCAGAGAGTCCACGATGCTCAGCTGCTCACCGAAAGGGCAATGCACCACGGCATTGACCTGGAGAAGATCAAGGCTTACATTGACTCGTTCCGTTATGGAGCTCCTCCTCATGCTGGCGGTGGCATAGGTCTGGAGAGAGTGACCATGCTTTATCTCGGCCTACACAACGTACGTCAGACCTCCATGTTCCCCCGTGACCCCAAACGCCTGACCCCATAAAGATTAAAGTAGCCGGTCGGCCTCTCGTCTCCCATCCCGCCTGAAACAGTACAAGCTCTCGGTCACCCAGCCATTGGGGATCTGGACGTGCCAGGATGTGGAAGTGCCATGATGATTAACCCACAAAAATGAAGCCACTTTTATAACACTTTTCACCAGATACAACAGGATGTTAGATAAATCTAATATACTTAAACCATTCAAGGGA

Function

symbol description
dars Predicted to enable RNA binding activity and aspartate-tRNA ligase activity. Predicted to be involved in aspartyl-tRNA aminoacylation. Predicted to act upstream of or within translation. Located in cytoplasm and synapse. Part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human DARS1 (aspartyl-tRNA synthetase 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K01876 DARS2, aspS; aspartyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000036_00975332_00984107.mRNA True 1150 mRNA 0.50 9 975332 984315

Neighbor

gene id symbol gene type direction distance location
CI01000036_00947110_00948159 CXCR4B coding upstream 26666 947110 ~ 948666 (+)
CI01000036_00542557_00543309 NXPH2, NXPH2A coding upstream 431946 542557 ~ 543386 (+)
CI01000036_00457595_00467133 TTF2 coding upstream 508199 457595 ~ 467133 (+)
CI01000036_00322865_00441961 IGSF3 coding upstream 533371 322865 ~ 441961 (+)
CI01000036_00234733_00237131 NA coding upstream 737988 233732 ~ 237344 (+)
CI01000036_00999312_01007326 GMPPAA, GMPPA, GMPAA coding downstream 14997 999312 ~ 1007363 (+)
CI01000036_01140528_01239535 ASIC4, ASIC4A coding downstream 156213 1140528 ~ 1239535 (+)
CI01000036_01274853_01288632 WNT6.S, WNT6B, WNT6 coding downstream 290538 1274853 ~ 1289612 (+)
CI01000036_01300508_01318859 WNT10A, WNT10A.L coding downstream 315964 1300279 ~ 1318896 (+)
CI01000036_01345899_01346471 NA coding downstream 361255 1345570 ~ 1346588 (+)
G173359 NA non-coding upstream 29551 945452 ~ 945781 (+)
G173323 NA non-coding upstream 127201 847888 ~ 848131 (+)
G173322 NA non-coding upstream 129986 845102 ~ 845346 (+)
G173245 NA non-coding upstream 254767 718953 ~ 720565 (+)
G173217 NA non-coding upstream 387343 581104 ~ 587989 (+)
G173249 NA non-coding downstream 26617 1010932 ~ 1011288 (+)
G173790 NA non-coding downstream 82909 1067224 ~ 1067681 (+)
G173811 NA non-coding downstream 147088 1131403 ~ 1131632 (+)
G173812 NA non-coding downstream 154376 1138691 ~ 1138920 (+)
G173807 NA non-coding downstream 174766 1159081 ~ 1163226 (+)
G173327 NA other upstream 111178 863295 ~ 864154 (+)
G173157 NA other upstream 394326 580062 ~ 581006 (+)
G173152 NA other upstream 497161 475352 ~ 478171 (+)
G174214 NA other downstream 762037 1746352 ~ 1747188 (+)
G174289 NA other downstream 1000569 1984884 ~ 2006413 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036984 dars1 coding NC_007120.7 CM002893.2 10699038 ~ 10759513 (+)
bowfin (Amia calva) AMCG00000903 dars,LOC107676220 coding CM030137.1 CM030137.1 8590668 ~ 8608633 (+)
mexican tetra (Astyanax mexicanus) G244578 dars,LOC107676220,LOC107749888 non-coding NW_019171228.1 APWO02000826.1 790959 ~ 846891 (-)