G244578 (dars,LOC107676220,LOC107749888)


Basic Information

Item Value
gene id G244578
gene name dars,LOC107676220,LOC107749888
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019171228.1
NCBI id APWO02000826.1
chromosome length 1889954
location 790959 ~ 846891 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU333873
agctctgtcttcaggagtttattaaagtgaGGGATGCTCCTTTAAGTGTGAATattagtgtaagtgtgtgtctcACTTGTCTCTGAGCCCCTTGAAGATCTGCACCATGGTGTCGGTGATGGAGTCGATGACCTCGTGGTAGTGGTAGTTGAAGGCCATCTCTATATCCAACCCCACAAACTCCGTCAGGTGGCGATGGGTGTTTGAGTCCTCAGCCCTGAAcacTGGTCCGACGCAGAACACCTTGTCGAAGTCAGCACAGATACACATCTGCTTATAGAGCTGTGGGGACTGGGCCAGGTAAGCACTGGTTTTGAAGTACGACACCGTGAAGACATTGGCTCCTCCCTCACTGGcagCTGAGATGATTTTTGGGGTCTGAATCTCCACAAAGCCCTTGTTGATGAGCGTGTCTCTGAAGAGCTGGCACACTCCAGACTGCAGCCGGAAGATAGCCTGACTCGTCGTGGTCCTCAGATCAATGACCCGGTTGTCGAGCTTGGTGTCCTGGTTAACCGTGGCTCTGCCTTCCTCCTCTCCATCAGCATCCGGCCGGACAGCATCCTCCAGCTGCAGAGGCAGCCTGGCCTCCGCCTGACTGATCACAtagatCCTCTCGATGTGCAGCTCCACGTCCTGCTGAGAGCAGCTCTCGATCTTCTGCTCCACCGGTGCACCACCGCCTCCACGTCCACGATGCTCTCCTTAGTGATGTTTGCGGCAAACTTGACCATCTGCTTGCTGGCCCGATCCCCCACAGCCACCAGCGCCTGCACGTTAAACTGCTGCTGACGCAGAACCAAGAAACACTGCTTCcCTTTGGCTCGGCTGGTGTGAATTCTGGCACGAACCCAGACCAGCTGACCGGCTTTCTGAGTGGTGAGGTCCTGAACTCGCACCAACGTCCTGTCCAGTTTCTCCTGAGACTGCACCATCTCAGACACTCCGTACCGGTCCTTCGCAAAGTCATCCTCATCAGATGTCTGCTGCTCAGCCGCCAGCTTGGCCTGTTTCTCGGCCTTCTTCGCCGCTTTCTCTGCTTCCTTCTGCTGTTTCTTCAGCGCTTTCTTGGACTGGGCCTGCTGGTCCTCCTCGGCCGCTCCGGTAACCGTGTCCTTAGTCATGGCTGCTCTGTTCTGACCCGGTTCGGTTCTGTTTGGGTCTGTAAATCTGCTGTAATACTCTCAGAAACGCGCCGCTGCTA

Function

symbol description
dars Predicted to enable RNA binding activity and aspartate-tRNA ligase activity. Predicted to be involved in aspartyl-tRNA aminoacylation. Predicted to act upstream of or within translation. Located in cytoplasm and synapse. Part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human DARS1 (aspartyl-tRNA synthetase 1).

NR:

description
PREDICTED: aspartate--tRNA ligase, cytoplasmic

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU333873 True 1204 lncRNA 0.55 12 790959 846891

Neighbor

gene id symbol gene type direction distance location
thsd7b LOC108414794 coding downstream 456782 126091 ~ 334177 (-)
LOC103033680 NA coding downstream 684030 100662 ~ 106929 (-)
LOC103035897 NA coding downstream 691094 88419 ~ 99865 (-)
LOC103032409 NA coding downstream 735963 51251 ~ 54996 (-)
LOC111197336 NA coding downstream 749885 33044 ~ 41074 (-)
LOC111197343 LOC108412955 coding upstream 10778 857669 ~ 872622 (-)
LOC111197342 NA coding upstream 27166 874057 ~ 879517 (-)
LOC103040456 LOC108443386 coding upstream 525442 1372333 ~ 1390526 (-)
LOC103022914 fev,LOC108411904,LOC103392488 coding upstream 800000 1646891 ~ 1653574 (-)
LOC111197335 cryba2,LOC105907595,LOC107749902,LOC107748546 coding upstream 812147 1659038 ~ 1665729 (-)
G244574 NA non-coding downstream 19625 770810 ~ 771334 (-)
G244565 NA non-coding downstream 82034 708510 ~ 708925 (-)
G244563 NA non-coding downstream 89251 701345 ~ 701708 (-)
G244561 NA non-coding downstream 106376 684372 ~ 684583 (-)
G244560 NA non-coding downstream 107337 683309 ~ 683622 (-)
G244581 dars,LOC107663896,LOC107676220,LOC107706104,LOC107749888 non-coding upstream 3388 850279 ~ 854524 (-)
G244598 NA non-coding upstream 89594 936485 ~ 975222 (-)
G244604 NA non-coding upstream 156990 1003881 ~ 1004180 (-)
G244612 NA non-coding upstream 204719 1051610 ~ 1051855 (-)
G244613 NA non-coding upstream 205697 1052588 ~ 1052787 (-)
LOC103033996 hnmt,LOC108413065 other downstream 676394 108507 ~ 114565 (-)
LOC103035287 NA other downstream 712664 62253 ~ 78295 (-)
umps NA other upstream 785188 1632079 ~ 1686088 (-)
G244785 NA other upstream 871931 1718822 ~ 1723437 (-)
zc3h15 zc3h15,LOC107752875,LOC107663835,LOC107562108,LOC107749874,LOC107672221 other upstream 912150 1759041 ~ 1771385 (-)
LOC103023859 LOC108413098,LOC105902664 other upstream 926781 1773672 ~ 1794855 (-)
LOC111197344 NA other upstream 955844 1802735 ~ 1830865 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000036_00975332_00984107 DARS, SYDC, DARS.L coding CI01000036 null 975332 ~ 984315 (+)
bowfin (Amia calva) AMCG00000903 dars,LOC107676220 coding CM030137.1 CM030137.1 8590668 ~ 8608633 (+)