G173159


Basic Information

Item Value
gene id G173159
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 447170 ~ 448008 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU196711
TCAGTTAAGCTTTTCCTGTAAGTTGAATAGGGAAGGCGTAGGACACAAGGTGTGAGAGTTTTACACTTTCTTCATAACTTGAATACGGAAGGCAGTCTGGCAGAAGCTAGATATTTTACTTCATAACTTGTTAAATATGGATATTGTTTTTTACACAAATGCATCGCTTCACTTCAGACGGCCTTTATGAACCCTCTGGAGCCGTGTGGAGTATGTTTATGATGGATGAATGTGGATGGAGGCACTTTCTTCAGCTCATACTCGTTGGTCCCATTCACTGCTATTATAAAGCTCGGATGCATCAGGCTATTTATTAATATTTCTCTGATTGTGTTCATCAGAAAGAAGAAAGTCATATACACTTAGGATGGCTTGAGGGTAAGTAAAGCTTGGGGTAATTTTCATTTGAAAGTGAACTAATCCAATTAACGATATGATTGTTAAATAAGTTGTAATTTGCTAGTTAGTTGCAGATTTTTCTTGGGGGAGAGATATTCTCATTCTAGAGAGCATTTGAATTGGACAAATATTTGAGAGAGGCTATAAGTCCTAAAGGTGCAGTATGGAAGATTTGGTCCTCTAGCGATTGTTGTAAAACTGCAAGTTACTCCCAAACAAACATTGTTTTGCTAATTACACGAGTTGTGCTTCGGCTCAGCTATTCAGCATGCATGAATATGACGGTTGGAGGTGTACCCGTTGTTTACAGTGCTTGAAATGCTTTTCTTACTTAGATTTTTTTGTCTTGTTTCCAGTCCAAATATCTAAAAATTCTTAAATCAAGAAGCATTTACTAGACAAGTAAAAATTGTCTTGTTTTCAGAAAAAATAAGTCAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU196711 True 839 lncRNA 0.36 1 447170 448008

Neighbor

gene id symbol gene type direction distance location
CI01000036_00322865_00441961 IGSF3 coding upstream 5209 322865 ~ 441961 (+)
CI01000036_00234733_00237131 NA coding upstream 209826 233732 ~ 237344 (+)
CI01000036_00230834_00232989 NA coding upstream 214178 229638 ~ 232992 (+)
CI01000036_00134824_00154438 RAMP1 coding upstream 292699 134673 ~ 154471 (+)
CI01000036_00079301_00108297 EPB41L5 coding upstream 338819 78244 ~ 108351 (+)
CI01000036_00457595_00467133 TTF2 coding downstream 9587 457595 ~ 467133 (+)
CI01000036_00542557_00543309 NXPH2, NXPH2A coding downstream 94549 542557 ~ 543386 (+)
CI01000036_00947110_00948159 CXCR4B coding downstream 499102 947110 ~ 948666 (+)
CI01000036_00975332_00984107 DARS, SYDC, DARS.L coding downstream 527324 975332 ~ 984315 (+)
CI01000036_00999312_01007326 GMPPAA, GMPPA, GMPAA coding downstream 551304 999312 ~ 1007363 (+)
G173171 NA non-coding upstream 165670 281283 ~ 281500 (+)
G173170 NA non-coding upstream 166288 280600 ~ 280882 (+)
G173169 NA non-coding upstream 169650 277311 ~ 277520 (+)
G173158 NA non-coding upstream 179919 243972 ~ 267251 (+)
G173104 NA non-coding upstream 233400 211291 ~ 213770 (+)
G173189 NA non-coding downstream 39607 487615 ~ 487911 (+)
G173149 NA non-coding downstream 46119 494127 ~ 495298 (+)
G173148 NA non-coding downstream 50956 498964 ~ 504731 (+)
G173196 NA non-coding downstream 64849 512857 ~ 513107 (+)
G173155 NA non-coding downstream 67072 515080 ~ 516137 (+)
G173152 NA other downstream 27344 475352 ~ 478171 (+)
G173157 NA other downstream 132054 580062 ~ 581006 (+)
G173327 NA other downstream 415287 863295 ~ 864154 (+)
G174214 NA other downstream 1298344 1746352 ~ 1747188 (+)
G174289 NA other downstream 1536876 1984884 ~ 2006413 (+)

Expression


Co-expression Network