AMCG00021560


Basic Information

Item Value
gene id AMCG00021560
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21241666 ~ 21257189 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021560
ATGTGTATAAATCACTTTATCCCCCCAACCTTTGTGTTTCAGACCGCCACGGTGAGTCCGGCCCGGCCCGTCGACAGTGCCCAGCCTGCCCCACTGACCAATCAGGGCGCAGAGGCAGCTCCGCTGATGCCCGAGCTCCTGGGAGACGTCCCGTTCACCTTGGCGCCGCACGTCCTGGCCATGCAGACCGACGTCACCGACCTCCCCAACGTGCTGCTGTCTCAGGACATCAACGACAACCTGGCCAGCTTCCGCTATGACTTCACTCTGGAGAACTCTGTGCTGTGCGACTCCTAA
>TU108424
ACAGGATCCATCTCCCAGTAACGGCCTGGAGTAGCTCCCATGTCAGGGGAATACGGGCTTAAACAGCAATATAACAGTACAATAGACAGATCAACGCGTTTCTGTCTGTAGAGGAAGACGGCGGCGTCACTAGTGATACCAGGCACTCGGCTGAAATGTTCAGTTTCCTTGGACTTCGTAAAGAGTCGTCAAAGAAGTCGGCCTCTGAGAAGGAAACAGATGGCTTTGTTATCGTAGACCGCCACGGTGAGTCCGGCCCGGCCCGTCGACAGTGCCCAGCCTGCCCCACTGACCAATCAGGGCGCAGAGGCAGCTCCGCTGATGCCCGAGCTCCTGGGAGACGTCCCGTTCACCTTGGCGCCGCACGTCCTGGCCATGCAGACCGACGTCACCGACCTCCCCAACGTGCTGCTGTCTCAGGACATCAACGACAACCTGGCCAGCTTCCGCTATGACTTCACTCTGGAGAACTCTGTGCTGTGCGACTCCTAACACGACAGCGCGTCGTCTCTCTGCCGCGGGGGTTCAGTTGTGGTAGCCGGGTTCGTGTTTTAGCTGGTGTGATCAAAAGCGATTGGAATCATGGTCATCAAATCACCAGCTTCTAAAATGTTgccaaaaaagtgaaaaagaatgATTTAGAATatggggaaaaacaaagcacttgCAAACATTGGGTTTACTTAGTTTGTGGTCATGTACATAGGTAAGATAAGAGGATATTTTCatattgtgtgtgcatgtgacctgaaattaaaactataacaaATACTTTATCATTTTACTGAAGTGTTAATGAAACCCCGTATGTAGCAATTCAGTGAGTAGCACACGCTTTGAAAGGAAGGATACCTTTGTGTGGTTTGGATTGCGGGATATTTACACTCGCCCACTCTCTCTCACATCTCTTTGCACACATTGTCCTTCCTAACGTGTCTTTTATATCTTGAAATAATAGTGTGCTTTGACCCTGAGGGCTGGAGTAAATTGGGCTTTAGCTGAATGAGATGCTCAACAACTAACGGTGTATCGAGGTCCTACTGGTTTTGATTCCTTCTGGGCTTCACATGCCTTGTAACCCAACCTTTTTATGTACTACACACAACGCAGTAACAGGTATCGGTGTCTGAAGTGAAGTATACAACACTAGACCTGTGAGCGGCTGCAATAGGTTTATTTACGAGGCCGATATCTGCAGTCTGTATGGAGATCTCTCTCTTCATGCGCTTTGGAAGCCACAGAGACTGATTAGGCAGTTGAAACCGAATTGAAAAAACTCAGAAACTCTCGTTGAAGCGCGTTGGGCCACAGTTTCGATTACGATTGTCTCCAGTGTTCACTCTCATTTTCCCTGATTTGCCGATGATCTGATGCGATTATCTGGTCAGGGGAAGGGAAAGGTGTCCTCAGATGCAAAGAGACAGCCGAGCTCCTGTCGTCCTTGTGTCATGGTTCAGAGAGGATCATTTCTAGAGATTTCTGTGCGTGAAGAGCTCACCTGAGGGGAGATTACGGGACGCTGGCCAGTCccctgttgtgtgtgtctggagcCCGGGGCGAATTGTGAAGCAGAGGGTATAAAATGATGGGTGGAAACACAGAATTATTCTGCTTGAGAAGGAGAAACGTTCAGGGATGATCCGATTGTCTGAACGTTAGttttattgaatattaaaaatgaacactgGTTAGTTGTAGAAGGACGTTTCAATGGTTATCAAAGTGTAATTCGTGAAAATGCAAGACTGCGGTTTTGTTTTATCAGGTGTTTGACTCACAGTGATCAACTGGTAAATATAGATAGAATGAGAATATAATCTATATTATATGGTATTTTTCTGTTCATACCTCAGAACGGGATGGTTGTACGACTCCCAACTCAACTTGTACGACTTTCTTGCTATACCAAAACCAGTCTTCTCAGGAAACGCTAAGCCATTTCTTTGAGGAAATGCTTGATGAAACGTATATGGCACTACATGCAAAGATTAGATTTCACGGGGAACTGTAAATAGCAGTCAATTAGAGAAATGCACAAAACTTAGCATTTAGTCCTCCTGGAACCGAAAGCTTAACACTTTGTACACAACTGCACAATTGTCTTGTATGtgtggtttttagtttttttttttttttcaccctggCCTGAAATACTTTTGTTTCCACTTcgaaaatagtttttcttgattttccCCTCATTGGAAAGGCATGGCTGTATTAGAAGATTACGAAGCAAAGGGGGAACCCTTTGAAAATAGTATTTAGTAGGTACTGCAGAAAAAATCATAAATTATAATAGATTAATAAACTTTTTATGTTGAAACAAGTCATAGTTACATGGTGTCTGTGCtgaatgtttgcttttgtgtgaGTGATATTGAACTAACTCTGTTTTTGCCAAATAAATTCCCATAAAGGAGTAGCATTTTAAATGCTATAATTTCACTctttttggggtttgttttttcctttacaataaaagggag
>TU108425
ACAGGATCCATCTCCCAGTAACGGCCTGGAGTAGCTCCCATGTCAGGGGAATACGGGCTTAAACAGCAATATAACAGTACAATAGACAGATCAACGCGTTTCTGTCTGTAGAGGAAGACGGCGGCGTCACTAGTGATACCAGGCACTCGGCTGAAATGTTCAGTTTCCTTGGACTTCGTAAAGAGTCGTCAAAGAAGTCGGCCTCTGAGAAGGAAACAGATGGCTTTGTTATCGTAGGTAAGAAACTGCCGCCTCTTTAAAATGGACTGTCCAGCCGTTGTGGACAGCAGCTGCACTCTTTACATATAGATCTATAAGTGAGATGGTGCCTGTATTAGGTTATGAATGATGCTGTGATGattcatttttcacttttggTTTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021560 False 297 mRNA 0.61 1 21254899 21255195
TU108424 True 2486 lncRNA 0.43 3 21241666 21257189
TU108425 False 385 lncRNA 0.45 2 21241666 21243017

Neighbor

gene id symbol gene type direction distance location
AMCG00021556 NA coding upstream 47064 21192962 ~ 21194602 (+)
AMCG00021555 NA coding upstream 48909 21180802 ~ 21192757 (+)
AMCG00021547 dlx6,LOC107670195,LOC107665661 coding upstream 160981 21077945 ~ 21080685 (+)
AMCG00021543 dync1i1 coding upstream 261041 20957229 ~ 20980625 (+)
AMCG00021544 dync1i1,LOC102799504 coding upstream 301458 20929804 ~ 20940208 (+)
AMCG00021563 NA coding downstream 12014 21269203 ~ 21291092 (+)
AMCG00021565 LOC108410782,LOC107670023,LOC107698976,LOC107722163,LOC107555956 coding downstream 102979 21360168 ~ 21361602 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding downstream 316861 21574050 ~ 21605063 (+)
AMCG00021567 NA coding downstream 400353 21657542 ~ 21659873 (+)
AMCG00021570 tmem106b,LOC107584266,LOC107724356,LOC107709260,LOC107696205,LOC107702131,LOC108425340,LOC103043314 coding downstream 557781 21814970 ~ 21828220 (+)
G86859 NA non-coding upstream 3503 21237101 ~ 21238163 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 66007 21172090 ~ 21175659 (+)
G86800 NA non-coding upstream 203241 21035102 ~ 21038425 (+)
G86727 NA non-coding upstream 338811 20901027 ~ 20902855 (+)
G86695 LOC103362787 non-coding upstream 539209 20699214 ~ 20702457 (+)
G86884 NA non-coding downstream 38342 21295531 ~ 21297780 (+)
G86892 NA non-coding downstream 258844 21516033 ~ 21516243 (+)
G86905 NA non-coding downstream 381087 21638276 ~ 21638516 (+)
G87030 agr2 non-coding downstream 1046377 22303566 ~ 22306888 (+)
G87086 twist1 non-coding downstream 1330025 22587214 ~ 22588925 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 5586 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 8813 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 76166 21158624 ~ 21165500 (+)
AMCG00021550 NA other upstream 132298 21098419 ~ 21109368 (+)
AMCG00021539 pdk4,LOC107722149 other upstream 329664 20908817 ~ 20912002 (+)
AMCG00021591 NA other downstream 1013682 22270871 ~ 22291141 (+)
AMCG00021602 NA other downstream 1439975 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 2917214 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 2926019 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 3652695 24909884 ~ 24949100 (+)

Expression


Co-expression Network