AMCG00021703 (galnt12)


Basic Information

Item Value
gene id AMCG00021703
gene name galnt12
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26152068 ~ 26197076 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021703
ATGGCACACCGAGGCCGACGACAGCGGCTCAAGTTGCTGCTCTTGATCCTGGGGGCGTCCGCTGTCGGGTACGTGTTCCTGAGCcggggccggggccggggccggggccggggccgGGAGGTCGGCGCTGCGGAGAGGCGAGGGCTGTCAACAGGTGGGGACGCACCGGAGCTGGAGCAGCTCAGGAGACCCGTGTATGAGAAGCCCCCTCTGGACGCCAGTGCGCTTGGGGAGTGGGGGGCTGCTGTCAAGCTGGACTTggaaggagaggagaagaggaaaGAGGAGGAAAGCATTAAAAAGCACCAGATCAACATTTATCTGAGCGAGAAGATCTCTCTGCACCGCAGGCTGCCGGAGAGGTGGAACCCCCTCTGTAAAGATCTGAAGTATGATTATCTCAGCATGCCAACCACATCTGTTGTCATTGCATTTTACAACGAGGCCTGGTCCACACTGCTGCGGACCGTTCACAGCGTTCTGGAGACCTCGCCTGACATCCTGCTCAAGGAAATCATCCTGGTCGATGACTACAGTGACAGAGGTGTGAACGTGTACACTGTGCTGCAAGctttaatacttttttgttttcctagaATAAAGGAGAAAGAGTCGGCAGTGGTGTGTCCAGTGATTGATGTCATTGACTGGAACACCTTCCAGTATCTCGGGAACTCGGGGGAGCCGCAGATCGGCGGCTTTGACTGGCGGCTGGTTTTCACCTGGCACTCTGTCCCCGAGTACGAGCAGAAGAGAAGGAGGTCTCCTGTTGACGTGATCAGgtCTCCAACAATGGCTGGTGGCTTGTTTGCAGTCAGTAAGAAGTACTTCCAGTACCTGGGAACGTATGACACAGGCATGGAGGTGTGGGGAGGGGAGAACCTGGAGTTCTCTTTTAGGATCTGGCAATGTGGGGGCAGCCTGGAGGTTCACCCATGCTCTCATGTAGGCCATGTCTTCCCCAAACAAGCCCCCTACTCGCGAGGCAAGGCCTTGGCCAATAGTGTCCGTGCTGCCGAGGTCTGGCTGGACGAGTTCAAAGAGATCTACTACCACCGCAACCCCCATGCTCGCCTGGAAGCCTTTGGAGATGTGACGGGCAGGTTAGAACTGAAAAAGAGACTGGGATGCCAAAGCTTTCAGTGGTACCTCGAGAATGTGTACCCTGATATGCACGTCCCCCAGGACCGACCTGGAATGTTTGGCATGCTGAAGAACAAAGGGATGGTGAATTACTGTTTCGACTACAATCCACCAGACGATCACAATGTTGCTGGACACCGAGTGATCTTGTATCCTTGCCACGGCATGGGGCAAAATCAGTTCTTCGAATACTCTTCTGACCTGCAGATTCGCTACAACACCAGGGAGCCAGCGGGTTGTGCGGCAGTAGAATATGGGACGGAGTATTTAACAATGCACCTGTGCAGTAAACCTGGGCAGGCAGTTCCAGATGATCAGAAGTTTGTCTTGAGAGAGgATAGCACCTTTTACCACCCCCAGACCAACAAATGTTTGCAAGCCACTGACAAGTCAGACACAGGCAGTCCAGTCCCCGTGTTCAGACCCTGTTCGGACTCCAACTTGCAGAAGTGGTTCTTTGAGGAGAGAACGTAA
>TU109668
TCGCTTTACAGGATCCTGATTTCACATCCCCACGCAGGGTCTGGATTAGTGCGCGGCGTGTGACCTGTGCGCGCTAATCTAGTGTAATCCGACTGTAATCTGTTTCACGGCGGCACTGCCCTGCACGGCTGGTTTGTGTTCAAGCTCCACAATGACCAGCCAACACAAATAAGTTGAGAAACATGACACATTGCCCTGCTTTGGGAATCTGCAGCACGACTTGAGCAGGGGAGGAGACCCGTGCGGCTGCAGCCAGCGCCCGCCTCCGTTACTACTATCAGCGATGCACAAGTTTCTCATTCGCCCGCTCGCCCGGCCGATGGAGACGTGACATTTCACCGCACTGGCCGAGGCTGCGAGTGTCGGGAGCGCAGGGGCACCATCTGGGCACCATGGCACACCGAGGCCGACGACAGCGGCTCAAGTTGCTGCTCTTGATCCTGGGGGCGTCCGCTGTCGGGTACGTGTTCCTGAGCcggggccggggccggggccggggccggggccgGGAGGTCGGCGCTGCGGAGAGGCGAGGGCTGTCAACAGGTGGGGACGCACCGGAGCTGGAGCAGCTCAGGAGACCCGTGTATGAGAAGCCCCCTCTGGACGCCAGTGCGCTTGGGGAGTGGGGGGCTGCTGTCAAGCTGGACTTggaaggagaggagaagaggaaaGAGGAGGAAAGCATTAAAAAGCACCAGATCAACATTTATCTGAGCGAGAAGATCTCTCTGCACCGCAGGCTGCCGGAGAGGTGGAACCCCCTCTGTAAAGATCTGAAGTATGATTATCTCAGCATGCCAACCACATCTGTTGTCATTGCATTTTACAACGAGGCCTGGTCCACACTGCTGCGGACCGTTCACAGCGTTCTGGAGACCTCGCCTGACATCCTGCTCAAGGAAATCATCCTGGTCGATGACTACAGTGACAGAGCACATTTGAAG

Function

symbol description
galnt12 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human GALNT12 (polypeptide N-acetylgalactosaminyltransferase 12).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021703 True 1617 mRNA 0.55 9 26152460 26161715
TU109668 False 947 TUCP 0.59 3 26152068 26197076

Neighbor

gene id symbol gene type direction distance location
AMCG00021702 LOC106588954,LOC103026965,LOC106570445,LOC102291972 coding upstream 3988 26130482 ~ 26148080 (+)
AMCG00021704 NA coding upstream 30232 26120851 ~ 26121836 (+)
AMCG00021697 NA coding upstream 208682 25922202 ~ 25943386 (+)
AMCG00021694 LOC108441798,LOC107698647 coding upstream 319684 25803425 ~ 25832384 (+)
AMCG00021689 NA coding upstream 435482 25714584 ~ 25716586 (+)
AMCG00021706 gabbr2,LOC107653854,LOC107724329,LOC107710365,LOC107670291 coding downstream 138574 26335650 ~ 26371009 (+)
AMCG00021705 gabbr2,LOC102793833 coding downstream 220230 26417306 ~ 26432305 (+)
AMCG00021708 NA coding downstream 328194 26525270 ~ 26533407 (+)
AMCG00021714 NA coding downstream 378329 26575405 ~ 26576697 (+)
AMCG00021712 phf20l1,LOC107724788,LOC107671837,LOC107704904,LOC107587800 coding downstream 382249 26579325 ~ 26596350 (+)
G87824 NA non-coding upstream 57872 26091176 ~ 26094196 (+)
G87786 NA non-coding upstream 266365 25885446 ~ 25885703 (+)
G87765 NA non-coding upstream 319080 25832454 ~ 25832988 (+)
G87704 NA non-coding upstream 622483 25529324 ~ 25529585 (+)
G87525 NA non-coding upstream 1791159 24359504 ~ 24360909 (+)
G87939 NA non-coding downstream 513141 26710217 ~ 26713476 (+)
G87942 NA non-coding downstream 523833 26720909 ~ 26737883 (+)
G87961 NA non-coding downstream 611181 26808257 ~ 26810867 (+)
G87962 csk21,LOC107734013,LOC108425256,LOC105910791,LOC105902032,LOC105022821,LOC108267736 non-coding downstream 615954 26813030 ~ 26817282 (+)
G87993 NA non-coding downstream 699649 26896725 ~ 26906365 (+)
AMCG00021693 NA other upstream 281873 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 398815 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 779729 25276776 ~ 25372339 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other upstream 1202968 24909884 ~ 24949100 (+)
AMCG00021657 NA other upstream 1953241 24183208 ~ 24198827 (+)
AMCG00021707 NA other downstream 338017 26535093 ~ 26569148 (+)
AMCG00021745 NA other downstream 1435839 27632915 ~ 27637084 (+)
G88238 NA other downstream 2581239 28778315 ~ 28778733 (+)
G88276 NA other downstream 2863811 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 3067751 29264827 ~ 29275347 (+)

Expression


Co-expression Network