G87962 (csk21,LOC107734013,LOC108425256,LOC105910791,LOC105902032,LOC105022821,LOC108267736)


Basic Information

Item Value
gene id G87962
gene name csk21,LOC107734013,LOC108425256,LOC105910791,LOC105902032,LOC105022821,LOC108267736
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26813030 ~ 26817282 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU109792
CTGGTAGTCTACCAGCAGCTCCGGTCCCTTGAAGTATCTGGAGGCGACTCGAACATTGTATTCCTGTCCAGGATGGTAAAATTCTGCCAAGCCCCAGTCTATCAGACGAAGCTGTAACCATCAATTGACCTTTCTGTGTTCATGGTCAATCATTACATTGTGTGGTTTGACATCTCTGTGCATGATTCCCATACTGTGACAGTAATCCAGAGCCTGAAGGTACAAGAGGAAAATAGGACAGTTTAAAAATGGTCACATGGTCTGCCAGAAGCTGGTCATTCAGCAAATATTACAAGTGTTCCATTAGCTACAAACTTATCTGGcttcatagaaaaatataaaaatcataagAATCACATTCATGCGGAAAGGAATTTAACACCCAAGAAACATTCACATCTAAGTGGTTCTCTTACGTATTTGGAATTCTGAATGAGAGGTTTTCTGTtaactgcattttcaaaagcacTTCTGTCTTACTGTTTTTGAGAGGTATGAACCctaagcaaaacaaatgcacagtaaaGCATTGCAACAATTTATTTATAGCATGCATTTGTGCTGCCACAATCACAGAGTCCAAATGTACATAGCCCAGGTCACAAACGGATTATGTAAAGCTTTAATCGAATACAAACAGTGCAGAGGTaccaatgcaaaaaatatcctATAAATTggatttccaattaaaatatttttgctaAGCAAGTGGCTTTTTCATGCAGGCataccattttatttatgttatagtATAACTATTTCTAGGATGCATGCTTGGTAAACTGTGTTAAAACTCTTCCATTAAGAACAATATTATCTGTCTTGAGCCATGCTGTACCAAAGCTACCTGGTGGCATGTAGATTTTTTCAACATTGCTACAAATGCTGATATCACTATTGTGGTTTGCCTTTGTAGTTTTATGCCAGGAGATGaatcattatataaaaaaaaaagaaaactaccaAAATGGCAATGGTCACACTGCTATGGGCACAAAGGACTACTTTATAGCTTTATGACTTTCAAACTTCCTGGTTAACCCTTGGCCATTTAAAGTCTATGATTGCAATGGCCTCATATAGAAGGTGTTAAAGCAGCACACTTAAATTGGGTTTGTTGgggaagattttattttttatctagTAATTTGCATTAGTCTTTTTGAACAGttctttcagaaaataaaatctgttcatGCATTTCAGTAATGGTCCTTGGGCTTAAATACGCAAATTACCTTAATCTTGAAGATGCCAAGTATGCTCGAGAATTCCAAATAGTCAAAGcactatacattatttatagcAATGAGGGTAGGTGATATAACTGCTGATAACACAAGTGAACTCCCAGTTTATTTCTTGAGAACCATCTGAACTTTACTGGTCTACATCAATGTCCACTCCTGTAAGGCAATCTTAATCCATTCTGAAGAAGGGTACAGACAGTGCAAGCAGCTGGGGTGGTCTTCAAGACTAATACACAGTGATAGAGTTAAAGCAATATTTAAGTTGATAGAGGGAAATACTATTTCAGTCTGCATTAATACACATCAGAAGATTAAGGAAGCCTTACCTTTAGAATTTCATACATGTAGAACCGGATGTCGTAGTCTGATAATGTTTGATACAAttgCTTGAAGTCTGTGTTGTTTACATGTTCGAAAACCAGTGCTGGCGTCCGGGACACAGGATCTTTGACAATGTCTAAAAGTGTGATTATGTTGGGGCCACCTCTGAGGTTCTCTAGAATCTTAATTTCTCGcttgattttcttcttttttacaggCTTCAGAATTTTGACGACtactttttcattgtttgtgaTGTTTATGGCTTCAAACACTTCACTGTATTTGCCCCTGCCAAGTTTCCGCACCAGTTGATAATCATCTTGATTCCCCATTCAACAACATGTGATTCATAATCCCAGTACTCCCGgggtctctgtgtgtttacGTCAGGGTAAACTCGGGCTCGACTTGGAACTGGTCCAGACATATTCTGAAAACAGAGGTGAAGGTGATACTTTGTTGATcacctaaaaaaacaacaacaaaaaaaaaaaaatttaattcATCATCTGCCCTACCACATCATGGACAGTATGC

Function

NR:

description
PREDICTED: casein kinase II subunit alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109792 True 2111 lncRNA 0.38 6 26813030 26817282

Neighbor

gene id symbol gene type direction distance location
AMCG00021720 ptp4a3,LOC103029087,LOC108436585,LOC107587801,LOC107714615,LOC107552859,LOC107704902,LOC107724783 coding upstream 10045 26784119 ~ 26802985 (+)
AMCG00021718 NA coding upstream 61442 26750431 ~ 26751588 (+)
AMCG00021717 NA coding upstream 112789 26687100 ~ 26700241 (+)
AMCG00021711 NA coding upstream 132945 26661019 ~ 26680085 (+)
AMCG00021715 NA coding upstream 169709 26640291 ~ 26643321 (+)
AMCG00021721 NA coding downstream 19558 26836840 ~ 26844877 (+)
AMCG00021722 NA coding downstream 32596 26849878 ~ 26865877 (+)
AMCG00021726 bop1,LOC107693294,LOC107753474,LOC107669991 coding downstream 136875 26954157 ~ 26978899 (+)
AMCG00021729 NA coding downstream 183835 27001117 ~ 27002570 (+)
AMCG00021730 NA coding downstream 193587 27010869 ~ 27011910 (+)
G87961 NA non-coding upstream 2163 26808257 ~ 26810867 (+)
G87942 NA non-coding upstream 75147 26720909 ~ 26737883 (+)
G87939 NA non-coding upstream 99554 26710217 ~ 26713476 (+)
G87824 NA non-coding upstream 718834 26091176 ~ 26094196 (+)
G87786 NA non-coding upstream 927327 25885446 ~ 25885703 (+)
G87993 NA non-coding downstream 79443 26896725 ~ 26906365 (+)
G88024 NA non-coding downstream 240092 27057374 ~ 27057611 (+)
G88025 NA non-coding downstream 242900 27060182 ~ 27060389 (+)
G88026 NA non-coding downstream 244537 27061819 ~ 27062090 (+)
G88027 NA non-coding downstream 246281 27063563 ~ 27063951 (+)
AMCG00021707 NA other upstream 243882 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 615954 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 942835 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 1059777 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 1440691 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 815633 27632915 ~ 27637084 (+)
G88238 NA other downstream 1961033 28778315 ~ 28778733 (+)
G88276 NA other downstream 2243605 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 2447545 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 2561293 29378575 ~ 29385325 (+)

Expression


Co-expression Network