AMCG00021712 (phf20l1,LOC107724788,LOC107671837,LOC107704904,LOC107587800)


Basic Information

Item Value
gene id AMCG00021712
gene name phf20l1,LOC107724788,LOC107671837,LOC107704904,LOC107587800
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26579325 ~ 26596350 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021712
TTTGGGTTAGGGAGAGGGTTAAAGTATCAGAGAGCAGAAGAATGGAAAGAAGgctgagtttttaaaataagcccgttttcatgtttttcaaagCCTTAAAGAAAATAACTCTTGCTAGGCAGATAGACGGGTGAAGATGAGCCAGAAGCCCCCTCATCGTCCAGGCATTATCTTTGAGGTCGGGGCACGGGTGGAAGCTCAAGACTACCTGCAGAAATGGTACCCTTCACGCATTGAGAAGATTGACTATGAGGAGGGAAAGATGCTTGTCCATTTTGACCGCTGGAGCCATCGCTATGATGAGTGGATCTTCTGGGACAGCTCTCGGCTGCGGCCTTTAGAGAGGCCAGCCCTTCGGAAAGAAGGAAtgaaggaagaggaagaaatATGTGATCTGAGATCTGGAGAGGAGGTATTAGCTCGATGGACAGATTGCCGTTACTACCCTGCTAAGATAGAATCTGTAAATAAAGAAGGTACTTACACAGTGCAGTTCTATGATGGAGTTATTCGGTGTGTGAAGAGAATGCATATCAAATCAATGCCTGAAGATGCAAAAGGACAGGATTGGATCGCCCTTGTaaaagcagcaacagcagctgccAAGAACAGGGGTTCCTGTAAGCCTCGCACCAGCGCCAACAGCAATAAAGACAAAGAAGACAGGAGGGCGGGGAAAGCGTCTCCTAAAAGAGAGGACGACACTGCACCCGATATTGAGGCCCAAGATGTAACAGAGCCGCAGGAGGAGCCTGAGTCTGCTGAGAAATTAGagGAGGAACCAAAGCAAGCCCCCGAACAGCCTGAAACCGTGAAGATGAAGAGGAGGCGAGGCAGCCTGGGCAGTTCATTCCATGCAAAGAGAGCTCGTCTCAATACAATCACAGgTCTTTTAGTTTCAAAAGTCACCAATGAAGATGAGAGAGAGTTCAAGGAAGAGCAGAAGCAAGCTACAGAGGTATCTGAGGAGCACCGTAACCGGCGTCTGAAACATGACTCTGGAGAGTCGACGGGCAGCCAAAAGCAGTCAAAGTCCTCCTCGACAGTAATGCCAGTAGGGGAAGAGGTGTCTCTTGTACCTTCTGTTGCAGAATCGGCCCCTGTCCCAAGCCCTGGCCCCAGGCTGCCGGACAACATTCAGTCTGCACTTCCCACTCCTCCGCCTCCCAGCTCGCCCTGGTCCTCAGAGCACAGCCAGCGGCGAAGACGGTCCCAGCGTTTGGCGTATGGTGCACCGGACACCTCTTTGGAACctactccccccccaccctcggCTCCTGAAGGGAAAGAGCTTGACGCTGCACAGGAGTCCACACCAGACCCTGCTGTTCCTGAGGATAAGCCTGGGGAATTAGACACTACCTGTGTTGCTCTGGAGAAGCCGGCAGTACCCTTGGACCTCAGTGTTAGTGCGCCGCCAGCTTCAACACCCCCACCCTCAGCAtcgccacccccacccccccagcctcCTGAAACAGAGGGGGACCAAATACTGCCCGAAACCCCTTCTCCCGCACTGATGGCAGCTGAACAGAAAATGGCCTGTCCCACAGCAGCTGCAGTGTTGAAAGCTGTGCCAAGGGCTCTGAAGCCAAACAAACATGCAAGGGAGccaaTAATAAACACCAAAAAGCTAGAAGACTCCACTTCCCCTAAAGAGCCTCTCATAGACTTAGACCACAATAAGTTTAAGTGCAAGATTCCTGGCTGTTCCAAGGCCTTTCGGAAAGCCAAGCTGCTGGACTACCATCTGAAGTACTACCACAGTGCCGATAAGGAGACGGAGTCGGAGACGGGCTCCCCAGAGAGAGCTGTGCGCACAAGGGCCACCTCGGCTTCAGTCCCCACCTGCACGCCCCCGGAGAGTCACGACGCAAAGAGACGCAGGACTGTGTCCACCTCCgcttCCCTGTCCCCTCACGTCCATGCCTTACAGTTGGAATCACCTTTGAGCACCAGCTTGAAACCTGCCAAGTCCAGCAAGAAGAAGCGCTCCTCTGCCTCGGTCAGCTCTGAGGGCACGGAAATCCAGTTGCCGTTGCCGCCCCGGGAGAAGAGCTTTGAGAGCCTACATGAGAAGATCCTCAAGAAGGTCATCGAGAAGGACAAGCACTCGGAGCCAGgacaaataaaaactgagaaaaagaTAAAACTTGAGGAGAAGAGCCAACCAATAGgaaaaaagaaagagaaggacaAGGAGCGgaaagagaagaaggaaaaagacccttttaaaattaaacagaagaagaagaaaaagaagaaaaagaaatcaaaacagcacAGCTATTCTGATTTTGACGATCTGTCCCTGGCCTTTTTGGAAAGATGTTCCTCTCCGCTGAACCGTTCCTCTGGGAGCTCCTTTACTGTGCACAACACCTCTGCATCGAAACACACAACCTTCCAGTACCCGCGCGCCATCCTGTCTGTGGACCTCACTGGAGAGAATCTCTCAGATATCGATTTCTTGGAGGATTCTTCGACAGAGAGCTTGCTGCTGAGTGGAGATGAGTATAATCAAGATTTCGATTCCCTCACTATGGATGATTTCCCAGAGGAGGAGGATGCAGCCAATGAAATTGTGCGCTGCATCTGTGAAATGGATGAAGAAAATGGGTTTATGATTCAGTGTGAGGAGTGCATGTGCTGGCAGCATAGTGTTTGTATGGGATTACTGGAGGACAGCATACCTGAGCAATACATCTGTTACATCTGCAGGGACCCTCCAGGACAACGGTGGAGTGCAAAATATCGCCATGACAAAGACTGGCTAAACAAGGGGCATATGTACGGACTGTCCTTCCTCAGTGAGAACTACTCTCACCAGAATGCTAAAAAAATCGTTTCAACGCACCAGCTATTGGCTGATGTATACAGTGTGAAGAAGGTTTTACACGGACTGCAGCTCAAAATGGATATATTACATGAGCACAGCTACCAGAGACCCCCTGGGCTGGGGCTGGACCACCGGCTGGCTGCGGACCTCCTAAGCTCTgacggggaggagggggtgagGCTGGAGGAGGGCCTGGAACTTGTGGCCGAAAccgcaacacacacactgcaatttGTGCCAAAAgatgaacagGAGAGCACCGCAATCGCTGTCTCGGGTGGTCTGAGCGAGCACAGCCCGGAAGCAGCCGAACAGGCCCGGAACCGTCTTCAGTGGCAGCTAAACCTCCTCACACACATCGAGGACGTGCAGAACGAGGTGGCGGGCCGGATGGACCTCATTGAGAAAGAACTGGATGTTTTAGAAAGCTGGCTGGATTTCACAGGGGAACTGGAGCCACCGGACCCTCTTGCAAGACTGCCGCAATTGAAACGCCGAATCAAGCAGCTTTTAACAGACCTGGGAAAAGTACAGCAAATGAGTACCCTTTGTTCAGTCTGAGCCCCGACGCGGGGCAACAAAGAGCCGTACACTACAGCGTGACGGGACCGCCGAACCTTTTGTTTTCTCACAAGGTGCTCTCAGACAGGAAATACAGTCTCGCCCACTTTGTCTCGTTTGAGTGCAAAGGACGTTTGTCATGACCAGAcattagaaggaaaaaaactaaaaacaaggtAGCTGTCTGGTTTGGGTAAAGATTGAAGAAATTGAGCAATGGTAACATGAAAGGAGTCATGGCAATGTGATGGAAGATGGGCGATGGGGATGGGAGCTCAATGTGGATTCTTGACACTGGGGGGGCACAGATGGTGCTTGAGCAGCAAATAAGTAGCATAAATGTAAAGCTTCAAAAGTACATGGGTAACAGACCAGGTAGGTCAGGAAAAGGACAAAGAGTGGCACAGTTGTGAACCAAGGGGATTGTGGGAGtctacaaatgtgtttaaaaaataaggaaagTCACACAAACTAGCTGAAGTATACAGagcagcattttctttttaataatcgCATACAGTGAGGTCATTGTAGAGTAGATGTAGAGGGTAATAAGCttattgaaaagaaaacctGTAACAAGAAAGGTTAATGTGTGTGAAGTAATATAAAGGAGATTTctctaaaacatatatttagaCTTGAGAGTAATTGACTGGAACCATGCAAGAGACACAACCAGCCCAGTGGAGTTGTAGGTCCACAGAACAAGAGCTCACTAAGGCCAGTCAAAGACATCTGACAAACATGCCTGGTGTAAAATCAATCTGAAGGCCAGACTTATGAAGAGAGTCATAAAACCAACAGGCATTTGACCTGTGTCTGTTGAACTACTAAAAGCTGTGCTGTATGTGTAAATGAGTCCGATCTAAATCAAAGACTGAGTGCTTGAATTCTTAAACTTCAGAGAGTTGTGGTTCAAATCACTTTGGTTCTCTCTGAGGGGTATATTGTCCTGGAATCTCGTGCATTTCTTTGTCATGGGGCAGGAAACATTAATATCGCCCTCTTTCAAAAGCATTTGactttcttttgttattttctatatCATTGTAActcattgttaaaaaaaatatatatatatatatattgattatcCTGTATTGTGCCAAGTGTAATGAATAGCATAGATGTTTGAAGCTACTGTTATGTTATATGGTTTGGGCAGGCGAAATAAATTGTTTAGGGGGAAAACAGTGGAACAGATATGACCATTTAACAATATTCTGAGATAACGAGTGTGCTCTTCAGAAATGTTCTTTTTACAACCAGCTTGTAACTcgaaaaacaaagaacaacaataCTTATCTTCAGTACATATGTAAACTGTGAAGCCTGATGAGACCTAGAGCATGTTTAATCTGTTCTTGACCATCTGATTTCAACCCCTAGGCCTTCTCAAGTCTTGGCgtgtaatattttattctattgCAGCTATGCTTTACATTAAGTTTACATGTTATATGACACAAAGCTAGTCTTATAACAGGCTACATGCAAGCTGGgtgtaaatacaaacaaataacagtGTTGGACATAATgtatgtacagtttttttttaactgtaaaaaacaaaacttaatgaGGCCTATAATGACCTTAAATATACTTGAAGAAAATGCCTCAGTTTATTCAGCAGTTCTAGTTATCTGTATAAAGTGCGTTTTAGAACTGGTAGGGTATGAAACTTGAAGTTGCTTTTCATTACATATACCAACTGTACAttaagaatttatttaaaataactacaaaCAAGACTGTTCTTTATGTAATTTACTATATGTAAactgttcattaaaaatattctgTATAT

Function

symbol description
phf20l1 Predicted to enable metal ion binding activity. Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NSL complex. Is expressed in cloaca and proctodeum. Orthologous to human PHF20L1 (PHD finger protein 20 like 1).

NR:

description
PREDICTED: PHD finger protein 20-like protein 1 isoform X6

GO: NA

KEGG:

id description
K18402 PHF20; PHD finger protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021712 True 5213 mRNA 0.46 23 26579325 26596350

Neighbor

gene id symbol gene type direction distance location
AMCG00021714 NA coding upstream 2628 26575405 ~ 26576697 (+)
AMCG00021708 NA coding upstream 45918 26525270 ~ 26533407 (+)
AMCG00021705 gabbr2,LOC102793833 coding upstream 147020 26417306 ~ 26432305 (+)
AMCG00021706 gabbr2,LOC107653854,LOC107724329,LOC107710365,LOC107670291 coding upstream 208316 26335650 ~ 26371009 (+)
AMCG00021702 LOC106588954,LOC103026965,LOC106570445,LOC102291972 coding upstream 431245 26130482 ~ 26148080 (+)
AMCG00021713 NA coding downstream 1271 26597621 ~ 26640105 (+)
AMCG00021715 NA coding downstream 43941 26640291 ~ 26643321 (+)
AMCG00021711 NA coding downstream 64669 26661019 ~ 26680085 (+)
AMCG00021717 NA coding downstream 90750 26687100 ~ 26700241 (+)
AMCG00021718 NA coding downstream 154081 26750431 ~ 26751588 (+)
G87824 NA non-coding upstream 485129 26091176 ~ 26094196 (+)
G87786 NA non-coding upstream 693622 25885446 ~ 25885703 (+)
G87765 NA non-coding upstream 746337 25832454 ~ 25832988 (+)
G87704 NA non-coding upstream 1049740 25529324 ~ 25529585 (+)
G87525 NA non-coding upstream 2218416 24359504 ~ 24360909 (+)
G87939 NA non-coding downstream 113867 26710217 ~ 26713476 (+)
G87942 NA non-coding downstream 124559 26720909 ~ 26737883 (+)
G87961 NA non-coding downstream 211907 26808257 ~ 26810867 (+)
G87962 csk21,LOC107734013,LOC108425256,LOC105910791,LOC105902032,LOC105022821,LOC108267736 non-coding downstream 216680 26813030 ~ 26817282 (+)
G87993 NA non-coding downstream 300375 26896725 ~ 26906365 (+)
AMCG00021707 NA other upstream 10177 26535093 ~ 26569148 (+)
AMCG00021703 galnt12 other upstream 382249 26152068 ~ 26197076 (+)
AMCG00021693 NA other upstream 709130 25843694 ~ 25870195 (+)
AMCG00021692 NA other upstream 826072 25752357 ~ 25753253 (+)
AMCG00021682 NA other upstream 1206986 25276776 ~ 25372339 (+)
AMCG00021745 NA other downstream 1036565 27632915 ~ 27637084 (+)
G88238 NA other downstream 2181965 28778315 ~ 28778733 (+)
G88276 NA other downstream 2464537 29060887 ~ 29065339 (+)
AMCG00021772 NA other downstream 2668477 29264827 ~ 29275347 (+)
AMCG00021779 LOC108438266,LOC105891906 other downstream 2782225 29378575 ~ 29385325 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010808 phf20l1 coding NC_007127.7 CM002900.2 31601181 ~ 31622805 (-)