AMCG00021574


Basic Information

Item Value
gene id AMCG00021574
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21878156 ~ 21897029 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021574
CAGACAAGTGCACTTGTGTTGCTCCCACGGTCAGCACCCTGAAGTTGGTCTGAGCTAAATTTAGACCCTCAGAAGTCAGAAGAACAGGCAGGTGAAGATGGTTCTCTATCACAAGGAGTTTGAGAAGGCAGGGAAGACAGGTGGTCTGCAGATCTGGAGGATTGAGAGCATAGAGTTGGCTCCAGTACCTGAAAATCTATATGGCAACTTCTACGTGGGGGATGCCTATCTGGTCCTCCACACTGTCAAACAGAAGGAGAATTATTTCTACGACTTGCACTTTTGGCTGGGGAAGGAGTGCAGCCAGGATGAAAGCACTGCCGCCGCCATCTTCACTGTGCAGATGGATGACTACCTGGGTGGGAAACCCGTGCAATACCGTGAGCTGCAGGGCTATGAGTCCACCGCCTTCACCAGCTACTTCAAGGGGGGAATCCAGTATAAGGCTGGTGGCGTGGCGTCAGGGTTTCACCATGTGGTCACCAATGACCTGTCGGCTCAGAGACTTCTGCACATCAAGGGCCGCCGGGTCGTCAGGGCCACAGAGGTGCCTCTCAGCTGGGCCAGTTTCAACAGAGGGGACTGTTTCATCCTGGACCTCGGCGCATTCGAGCGCCTGAAGGCTGCCCAGGTGACTGCTGGCATTCGTGACAATGAGAGGAACGGCCGGGCGCAGCTCATTGTGGTGGAAGAGGGAACTGAACCAGAGGAAATGAAAAAGGTGCTCGGACGCAAACCCAACCTCCCAGACGGAGACGATAATGATGACAACGTGGCGGACATCTCCAACAGGAAAATGGCCAAACTGTACATGGTGTCGGATGCCTCTGGGTCCATGCAAGTGTCGGTCGTGTCTGAGGAAAATCCATTCTCACAAGAACAGCTCCTGTCAGAGGAGTGCTTTATTTTGGACCATGGGAAAAGcagaattatttttgtgtggaaaGGCAAAAACGCAAACCCAGATGAAAGAAAGGAAGCAATGAAGACAGCAGAAGGATTCATTAAACAGATGGGATACCCTGCGAATACTCAGATCCAAGTCCTTCCAGAAGGTGGAGAGACTCCCATCTTCAAGCAGTTTTTCAAGAACTGGAGGGAAAAGAATCAAAGCGAAGGATTCGGAAATGTGTACGTCACAGAGAGGATCGCCAAGATTGAACAAGTGCCCTTCGATGCCTCCAAACTCCACGAGTCGCGTCACATGGCTGCTCAGTACAACATGGTGGACGATGGGAGGGGAACGACCGAGATATGGAGGGTCGAAAGCAATGGCAGGATCCCAGTTGACCCTAAAACATATGGGCAGTTCTACGGGGGAGACTGCTACATCATTCTGTATACGTACAAAAATGGGCAGATCATCTATACCTGGCAGGGATCCAGCGCAACACGAGACGAACTCACAGCGTCTGCTTTCCTCACCGTCCAGCTGGATCGCTCGCTCGGAGGACAAGCGGTTCAGGTCCGAGTGTCGCAAGGCAAGGAGCCGGCACACCTGTTGAGCCTGTTCAAAGACAAGCCCCTGATTGTGTATAAAAACGGGACGTCGAGGAAGGATGGACAGAAGCCCGCTCCGCCCACCCGCCTCTTCCAAGTGCGGAAAAATCTGGGAACCATCACAAGAATTTCTGAGGTGGAGGTCGATGCCCAGTGCCTGAACTCCAATGATGCCTACCTCCTGAAGCTCCCGAGAAACCATGGCTTCATCTGGATAGGCAAGGGGGCGAGTGACGAAGAGGAGAAGGGAGCCCACTACATTGCCGGAGAGCTGGGTTGTAAAGCAGGCAAGATTAAAGAAGGGGATGAACCAGAGGACTTCTGGACGGCTCTGGGGGGGAAGAAAGAGTACCAGACCTCAGAGCTCCTAGAAAGCAAGTCCCTCACCCGGCCTCCTCGCCTCTACGGCTGCTCTAACAAGACCGGCAGGTTCATCATTGAAGAGGTACCAGGGGAATTCACACAGGATGACTTGGCTGAAGATGATGTAATGCTGATGGATGTTTGGGATCAGATCTTTCTCTGGATTGGAAAAGATGCAAATGAGGTGGAGAGAACCGAGTCATTGAAATCAGCCAAGAATTACATCCAGACTGACCCTTCCGGACGGGACAAACGAACCCCGATAGTCATCGTGAAACAGGGCCACGAGCCGCCAACTTTCACTGGCTGGTTTATGGCGTGGGATGCCACCAAGTGGGAGAACGACTCGGTGACCCAAGCCATGACTTCCCTCAAAGTTGCATAAAAGCATgagacaacaacaagaacagacatcaagtcacacacacacacacacacacaaaatacacatctaATTTCCTGCTTTGCTAGAATTGCTGAAGTAAAGATAGAGTCgttttttggaaaatatttgtgCAATACGTATGGCATATATTTACTGCTGGAAAGAAaggtatatatttgtataagcCACAGTCACAGGACATGAAAGTAAAAATCAATtcagtattgtttatttatctatgtgTTACTGCACAGTTTCTCAAATGAAATGCCTGTACGCTTATTgctggaaaacacaaataaacctctgagaaaacaaatcaaatgctCGCTGTTTGAATCAGTTATTAGTGTTTtgctttaacaaaaatatatttccttttctttacaaaatataaaggtcaaacaaatgtgtgctaCATTTTTGTAaccaccagggggcacacagaCCCAAATCAAACCACAAACAGATCTAGTTGGACAAAATACAACATCCAGTTGTAGTAAGTTATACCTGCCatgtcttatttaaaaatacaaagaattacATAGAAAGTATCCCAGTAACATCTTGGCTTAATGTCACATTATTCCTTCTAGGCCATAATTGTCTTTAAGGCCACTTTTAAATATCACACTGTCGCTGTGCAAGCAGGGACAAAAGGCCAGCGCTGTGGCTGGAGATGGCTTGAAaaattaactttacattttaaggaaCGGGCACAGGTACTGTGTATATCACTGTTATATCATTACGCTTTTAAATAAAGGCACCTGCGATCAtatcatatacattttgtaatgttttatgacttgtactgaactgtatttttgaactcTGTATTACGCTtctattttgtaagtcgccctggataggGGCAtctaccaataaataaatacatacatacataaataataa

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K05768 GSN; gelsolin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021574 True 3166 mRNA 0.47 16 21878156 21897029

Neighbor

gene id symbol gene type direction distance location
AMCG00021573 NA coding upstream 6088 21870653 ~ 21872068 (+)
AMCG00021571 NA coding upstream 43233 21832823 ~ 21834923 (+)
AMCG00021570 tmem106b,LOC107584266,LOC107724356,LOC107709260,LOC107696205,LOC107702131,LOC108425340,LOC103043314 coding upstream 49936 21814970 ~ 21828220 (+)
AMCG00021567 NA coding upstream 218283 21657542 ~ 21659873 (+)
AMCG00021566 phf14,LOC107722156,LOC107698992 coding upstream 273093 21574050 ~ 21605063 (+)
AMCG00021575 arl4a,LOC103358889,LOC104928894 coding downstream 2867 21899896 ~ 21902053 (+)
AMCG00021585 NA coding downstream 338949 22235978 ~ 22237376 (+)
AMCG00021584 bzw2,LOC107702135 coding downstream 351222 22248251 ~ 22265190 (+)
AMCG00021590 tspan13,LOC105012392,LOC108433833,LOC106588709,LOC107562755 coding downstream 396735 22293764 ~ 22301168 (+)
AMCG00021593 NA coding downstream 483221 22380250 ~ 22390591 (+)
G86905 NA non-coding upstream 239640 21638276 ~ 21638516 (+)
G86892 NA non-coding upstream 361913 21516033 ~ 21516243 (+)
G86884 NA non-coding upstream 580376 21295531 ~ 21297780 (+)
G86859 NA non-coding upstream 639993 21237101 ~ 21238163 (+)
G86833 LOC107754811,LOC107672863,LOC107731557 non-coding upstream 702497 21172090 ~ 21175659 (+)
G87030 agr2 non-coding downstream 406537 22303566 ~ 22306888 (+)
G87086 twist1 non-coding downstream 690185 22587214 ~ 22588925 (+)
G87091 NA non-coding downstream 731591 22628620 ~ 22628886 (+)
G87168 NA non-coding downstream 1110365 23007394 ~ 23014831 (+)
G87215 NA non-coding downstream 1247975 23145004 ~ 23191753 (+)
AMCG00021560 NA other upstream 620967 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 642076 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 645303 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 712656 21158624 ~ 21165500 (+)
AMCG00021550 NA other upstream 768788 21098419 ~ 21109368 (+)
AMCG00021591 NA other downstream 373842 22270871 ~ 22291141 (+)
AMCG00021602 NA other downstream 800135 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 2277374 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 2286179 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 3012855 24909884 ~ 24949100 (+)

Expression


Co-expression Network