AMCG00021596


Basic Information

Item Value
gene id AMCG00021596
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22540922 ~ 22575847 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021596
ATGAGACACGCTGGAGCCCAAACAGAGACATACGTCTGCTTGGACATCCAGAAAGCGCTAATCTTTGAAcagcagcatcaacGTGTCCACCAGCTCCGGCTGTACCAGGCTCAGACAGCAACAGTTGGCATGGCGGGATTAGACAAACAGCAGCCCGCTTCCAGAACCCAGCCGCCCCCCGCCGGCGCGCCGTTACTGCCCCCGTCACTAGATCACACGGCCGGGCACACCATCCCCACTGGAGTCGCGTACGACGCCGTGATGCTGAAACACCAGTGTACGTGTGGTAACTATTCTGACCATCCTGAGCACGGAGGACGGATACAGAGCATCTGGTCCAGACTGCAGGAGTCTGGCCTCATCAGCCAGTGTGAGCACGTTAGGGGTCGCAAAGCCAGCCTTGAGGAGCTGCAGCTGGTTCACATGGAGCATCATTCATTGCTGTATGGCACCAGCCCGATCCACCGGCAGAAACTAGACACCAAGAAACTCCTGGGTTCATCACCTCAGAAGAATTTCACTGTGATGCCCTGTGGAGGACTGGGGGTGGACAGTGACACCATTTGGAATGAGCTGCACTCGCCCAGCGCGGCACGCATGGCCGTTGGCTGTGTCATCGAACTGGCTTCCAAAGTGGCCTCAAGAGAGCTGAAGAATGGATTTGCTATTGTTCGGCCCCCAGGCCACCATGCAGAGGAATCCACAGCCATGGGATTCTGCTTCTTTAATTCGATTGCAATCACTGCCAAGCACTTGAGGCAAAAGTTTAATATCAACCGGATTTTAATCGTTGACTGgGATGTTCACCATGGCAACGGAACACAGCAGGCCTTCTTTAGTGACCCTCACGTCCTCTACGTTTCCCTCCATCGCTACGATGAAGGGAATTTCTTCCCGGGCAGCGGAGCCCCTGATGAGTGTGGAAGTGGCGCTGGCGAAGGCTACAATGTCAATATTGCCTGGACAGGTGGCCTGGACCCACCCATGGGAGATGTCGAATACCTCATGGCTTTCAGGACTGTTATCCTCCCCATTGCCAACGAGTTTAATCCAGATGTGGTGCTGGTGTCAGCTGGGTTTGATGCCGTAGAGGGTCACGACCCCCCATTGGGCTTTGGTCAACTAACCAAGCAATTGATGAGGCTGGCAAGTGGACGCGTGGTCCTGGCGTTGGAAGGTGGACACGATCTTAGCGCCATCTGCGATGCGTCAGAGGCCTGCGTGAACGCCCTGCTGGGAAATGAGCTGGAATCTCTCCCCGAGAAAGTGCTTCATGCCAAACCAAACGCCAATGCTGTGTCTTCTATCGAAAAGACGATTGAGATCCAgaGTAAGTACTGGAAATCAGTTCAGAAGTATTCTTCAGTCGTGAACATCTCTCTTGCGGAGGCGCAGAAGcatgagagagaggagacggACGCTGTCACGGCGATGTCTTTACTGTCGGTTGACGTACACCAGTCGTGCAAAGCACAGGAGAGCAGaacCGCGGCCGAGCCAATGGAAGAGGAGCCAGCGCTGTGA

Function

GO: NA

KEGG:

id description
K11407 HDAC6; histone deacetylase 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021596 True 1524 mRNA 0.55 15 22540922 22575847

Neighbor

gene id symbol gene type direction distance location
AMCG00021595 NA coding upstream 14049 22504145 ~ 22526873 (+)
AMCG00021593 NA coding upstream 150331 22380250 ~ 22390591 (+)
AMCG00021590 tspan13,LOC105012392,LOC108433833,LOC106588709,LOC107562755 coding upstream 239754 22293764 ~ 22301168 (+)
AMCG00021584 bzw2,LOC107702135 coding upstream 275732 22248251 ~ 22265190 (+)
AMCG00021585 NA coding upstream 303546 22235978 ~ 22237376 (+)
AMCG00021604 NA coding downstream 257188 22833035 ~ 22839518 (+)
AMCG00021605 NA coding downstream 266945 22842792 ~ 22900445 (+)
AMCG00021606 NA coding downstream 325457 22901304 ~ 22901525 (+)
AMCG00021617 NA coding downstream 424642 23000489 ~ 23003768 (+)
AMCG00021613 klhl7 coding downstream 493013 23068860 ~ 23074075 (+)
G87030 agr2 non-coding upstream 234034 22303566 ~ 22306888 (+)
G86905 NA non-coding upstream 902406 21638276 ~ 21638516 (+)
G86892 NA non-coding upstream 1024679 21516033 ~ 21516243 (+)
G86884 NA non-coding upstream 1243142 21295531 ~ 21297780 (+)
G86859 NA non-coding upstream 1302759 21237101 ~ 21238163 (+)
G87086 twist1 non-coding downstream 11367 22587214 ~ 22588925 (+)
G87091 NA non-coding downstream 52773 22628620 ~ 22628886 (+)
G87168 NA non-coding downstream 431547 23007394 ~ 23014831 (+)
G87215 NA non-coding downstream 569157 23145004 ~ 23191753 (+)
G87233 NA non-coding downstream 621774 23197621 ~ 23197869 (+)
AMCG00021591 NA other upstream 249781 22270871 ~ 22291141 (+)
AMCG00021560 NA other upstream 1283733 21241666 ~ 21257189 (+)
G86861 mios,LOC106605261,LOC106582151 other upstream 1304842 21235070 ~ 21236080 (+)
AMCG00021561 LOC106582151,LOC105891776,LOC106605261 other upstream 1308069 21229852 ~ 21232853 (+)
AMCG00021551 NA other upstream 1375422 21158624 ~ 21165500 (+)
AMCG00021602 NA other downstream 121317 22697164 ~ 22711144 (+)
AMCG00021656 NA other downstream 1598556 24174403 ~ 24178092 (+)
AMCG00021657 NA other downstream 1607361 24183208 ~ 24198827 (+)
AMCG00021676 kcnh8,LOC106570508,LOC106941718 other downstream 2334037 24909884 ~ 24949100 (+)
AMCG00021682 NA other downstream 2700929 25276776 ~ 25372339 (+)

Expression


Co-expression Network