RNA id: AMCG00021760


Basic Information

Item Value
RNA id AMCG00021760
length 2883
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00021760
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 28767415 ~ 28804176 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGAAATGAGGGGTAGACTTGAAGTCTTTCAACCGAATGAGCTGGGATTAGGAGATGGAGGTCGCGgTGGAGTTTCTATCTTCATGTGCAAAGTCTGCAACTTGTTCTCTCCTAGTCAGACAAAACTCCTCACGCATGTCTCGGAGAAACATGCGATTGAGGGATGCACCGTTAAGAGAAAACGGGGCCGGCCCAAAGGGTCTACCAAGAAGTTCTATGCTGAGGGGGAGCTCTTGGAGACGAGCACGAAGCAGAGACAAGAAGCTCAGCCTGAGACGGTGGAGGAGGTGGAGTCTGAAGACAGCAGCACCTTGGAGTGCAAGAAGTGCAATCGCAAGTTCTGCAACAAGCGGCAAATTAAGAAGCACATCTGCATAATAGGACTAAAGGAAGAGGGTGACGAGGAAGACGACAATGATAATGACCCTGATGCTAAGCTGGCATTAGAGGACAGAGACGAGGACAGAGAGAAGACACCAAAGAGGACCAGGGCCACGCGGACTGAGAGAGCCTCTTCTCTGAAGGACTCTGAACAAACGGGTGGCACCAAAAAGCCCATCATTAGTGTTGTTCTCACAGCGCATGAAGCTATTCCAGGCGCTACAAAGATTGTTCCAATTGAGGCCTCACCGGTGGAAACTGCCCCTGTACCAGAGACGGAGTCGAGTGGCCAGGGAACAGGTTTAAAAAGAGGCTACCAGGAATATGCCATTCAACAGGCATCCTATGAGCTGCCATTGAAGTCAAACAGGCTGGGACAAACACAGCTGAAGATCTTCACTTGCGAGTATTGCAACAAGGTGTTCAAGTTCAAACACTCCTTGCAGGCACACTTGCGCATTCACACCAATGAAAAGCCTTTCAAATGTCCGCACTGCGACTACGCCAGTGCCATTAAAGCCAACCTGAGCGTCCACCTGCGCAAGCACACGGGTGAGAAGTTCAGCTGCGAATACTGCTCCTTCAACTGTCTCAGCAAGGGCCACCTCAAGGTGCATGTTGAGCGGGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAGTACTCCGACGTCAAGAACCTGCTGAAACATGTCCGCGAGAGCCACGACATGGCCGACAAGAAGGTCAAAGACTCCTACGATGAGCTCTGCCTTCAGACCCGAGAAGGTAAACGGCAGCTTCTCTACGACTGCCACATTTGTGACCGCAAGTTTAAGAACGAGCTGGACCGGGACCGTCACATGATGGTCCACGGCACTGAGAGGCCTTTTGGCTGCGAGCTCTGTGACCACGGCTCTACTAAGTACCAGGCGCTGGAGGTCCACATCCGCAAGCACCCCTTCATCTACATCTGCGCCATCTGCCTCCTCAAATTTGTCAGCTCAGTCCGGCTGAAGTCACACATCAAGGAAACTCACGGTGATCAGGAAGAATTGGTGGTTTTCGGGGACTCCATCAACCAGAGCTTTTGTTTGCTGGAACCTGGCAGTGACGTCCAGCGAGACACACTGAAGCAGGAAGAGCTGCAGATCACTGAGGAACTTTCTTTGCTCAACACACAGGATGGGCTTGTCACAGAATTAGGACCAGCCGAAGCAGCTGCTCCACCTGAAACACGTGAAGGCTTAGGAGTCGAAGGACACATATTGGTGCAAGATACTGGTTTTGCAGAAACGATGGAAAGTCTTGTTCAAGAGGTCTGTACCACGCAAAGCAGTGACCTACAAGAAAGCAGAGTAATGAGTTCTGGTAAGGATCCTGAGCAACCTAATGTGACAGAGAAGACCCCTGAGGGATTCCAACATGGGGCAATTCATGAGCTTGTCAATGAAAAGCCGTTTGAAGAAGAAAGCATTCAGCAACTGACTGAAGATTCTGCTGCTGTGGAAAACACGAGTGTACATCTAACAGTGCCTCTGGAAAAAAGTACAATGTCAAGCCAAGAAGACCTAACTTGTAGTCAGCAGGCCACTGAGCCCAGTGTTGTGATGCATGAAGAGTCTCCATCAGAGAAAGTAGAGGCAAGCCAAGGAAATCTAGAAATAGCTCCAAACATGGAAACTGCAGGACAAACAGACCTTTCCCCTAATGGAGACCCGGGAGAGAAAAATGCATCCTCAGACCTTCAAGAGGAGAGGACGGCTTTCAAGCAGATTGTTGACGGTATGCAGAAGAGACAACTGAACATGGAAGTCTTTGAGAAGATTAGAAAAGTTTATGGGGATCTGGAGTGTGAATACTGTGGGAAACTCTTCTGGTATCAGGTGCACTATAACATGCACATTCGCACACACACCCGGGAGCATCTCCACTACTGCTCCCAGTGTAACTACTCCTCCATCACGAAGAACTGCCTTAAAAGACACGTGATCCAGAAGCACAGCAATATCCTGCTCAAGTGTCCTACGGAGGGATGCGAATACAGCACACCAGACAAGTACAAGCTACAGGCGCACCTAAAGATACACACTGACATGGATAAAAGAATCTACGTCTGCCCTGTGTGTGAGAAGTCCTTCCCAGAGGACCGACTTATTAAATCTCACATCAAAACCTACCATCCAGATGTGTCAATGAACACAATCTCAGAAATCCTGGGAAGGAGAGTGCAGCTGAAGGGTTTAATAGGGAAACGGGCCTCCAAGTGTCCTTACTGCGAGTGCTACTTCATGAGGAACGGTTCAGACTTGCAGCAGCACATATGGGCCCATGAAGGAGTAAAACCATTCAAGTGCTCCCTGTGTGATTATGCCACTCGCAGCAAGAGCAATCTCAAGGCTCATATGAACCGACACAACACTGAGAAAACGCACCTGTGTGACATGTGTGGGAAGAAGTTCAAATCAAAGTGCACTTTAAAGAGTCACAAGTTAATGCATACAGCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110115 lncRNA upstream 69330 28697878 ~ 28698085 (+) True G88225
TU110035 lncRNA upstream 785288 27888558 ~ 27982127 (+) True G88161
TU110028 lncRNA upstream 1130659 27632915 ~ 27636756 (+) False AMCG00021745
TU110022 lncRNA upstream 1135761 27627052 ~ 27631654 (+) True G88150
TU110023 lncRNA upstream 1145535 27620356 ~ 27621880 (+) True G88151
TU110127 lncRNA downstream 26730 28830906 ~ 28831323 (+) True G88237
TU110138 lncRNA downstream 98222 28902398 ~ 28902614 (+) True G88248
TU110140 lncRNA downstream 117453 28921629 ~ 28969948 (+) True G88249
TU110198 lncRNA downstream 460651 29264827 ~ 29268282 (+) True AMCG00021772
TU110201 lncRNA downstream 466381 29270557 ~ 29271545 (+) False AMCG00021772
AMCG00021762 mRNA upstream 256600 28510456 ~ 28510815 (+) True AMCG00021762
AMCG00021761 mRNA upstream 257380 28509629 ~ 28510035 (+) True AMCG00021761
AMCG00021763 mRNA upstream 257941 28506377 ~ 28509474 (+) True AMCG00021763
AMCG00021758 mRNA upstream 428895 28317272 ~ 28338520 (+) True AMCG00021758
AMCG00021753 mRNA upstream 554489 28206504 ~ 28212926 (+) True AMCG00021753
AMCG00021759 mRNA downstream 23810 28827986 ~ 28830377 (+) True AMCG00021759
AMCG00021764 mRNA downstream 187414 28991590 ~ 29005897 (+) True AMCG00021764
AMCG00021765 mRNA downstream 203220 29007396 ~ 29021741 (+) True AMCG00021765
AMCG00021766 mRNA downstream 221387 29025563 ~ 29041941 (+) True AMCG00021766
AMCG00021768 mRNA downstream 271925 29076101 ~ 29095261 (+) True AMCG00021768
TU109668 other upstream 2570339 26152068 ~ 26197076 (+) False AMCG00021703
TU109403 other upstream 3401438 25276776 ~ 25365977 (+) False AMCG00021682
TU109135 other upstream 4589425 24174509 ~ 24177990 (+) True AMCG00021656
TU108421 other upstream 7531335 21235070 ~ 21236080 (+) True G86861
TU108415 other upstream 7535927 21229852 ~ 21231488 (+) False AMCG00021561
TU110172 other downstream 256711 29060887 ~ 29065339 (+) True G88276
TU110265 other downstream 574399 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other downstream 574399 29378575 ~ 29382273 (+) False AMCG00021779
TU110433 other downstream 1463226 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other downstream 1584661 30388837 ~ 30394221 (+) False AMCG00021803

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019808 True 3437 mRNA 0.48 13 NC_007127.7 25343934 ~ 25360767 (+)