G86018


Basic Information

Item Value
gene id G86018
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17581307 ~ 17585472 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107359
CCGCAAAGAAACACAGCAGCttaaattttaaaacattttgattttattttataccaaaaaaaaaactctttaaagtataacaaaaaaaaaaaaaatttaacgGCACCAGATACAGAAGTCGCATTACGTGGAATTCAGAGCGAGCTGATGCGGTCTGGGTGATATTCTCACACAAGCACTGCAAATCCTCCCCGTTGCCGTCAGGCCCCTCCCTCCATTCTTCCTCAtctctttcttcctccctcACCCTCTTTCAAGAATTCATCACAAAGCAGTAATTGGTTTATACAGTGGCATACTTTTATGGCTTTAGACTGTGCCCCTAACACCCCAACTACAAACCTCAGTATTTCCACACACCCTCCCCCTCCCCGACGTGCCCCGGTGTCTGGATGCCATTAAAGTGAACATGTTGAGATGGAATACAGAAGCAAAGTGACAGACAGAAGAAGTGTCCCAGCGAAGGAGTGTGAGCAGGCACTGTTCACTTGGATCCCTCCGCACAGCACTGCTTCTTCTCCTGCTCAATATCTGAAGACaggcacaaacaaacagatgggTTAGTCACATGACATCATGAGCTAGCTTCTTCTGGTATTGCTTCCACTGTGCAATTGACATTACCCGACACTGCCCCTTCAGGGGATAGGTGCGGTGATCTGGTGTCGGTCAGTGCACAGCATGTATAGCTCTGCAACTACAGTAAACCCCAACTCTAACCCCAGTCACTACATTCTCCCTCTGAACGTTTTTGTTGTAGTAAGTTAACATCTaacagacatacaaaaaaaaaaaaaaaaaaaaaacctctatcTGACAGCAGCAATCACATGCGACTcctaaacaaattacaaatgtgcagAATCAGAGTCTGAGGCTGCAGGGTCACTGATGCCTGGTGCCGGCAGCCAGACAGCAGTGCACAGGCTCACGGACAGATCTGCCTGGCTGGTTAGAACCACCAACAAACCTCCAGTTTGTGAGAGCACGTGTGCGCGTTGGTGAGCAAATGTGTGTGTCCATGCGTGCCTATACGAGTGTGTGCCAGTTAGTGTCTGCGTGGGAGTTAATGCATGtctgcatgcatgcatgcatgcatctgtgagtgcgtgtgtctgtgtctgtgttatgGGTGAGGATGGGTCCCAGGCACACCGTTTCTTTCTGTATGGCTTGGCTGGCAGTTTTAGCGCAGTTATTACACAAGCAGTCAGGCTGCAGTGACACCATTGCCAGGCCTCTTGCTCAATTCCCAACTGTACTCTACACTTTTGCTGGCCCCGTGGGGGAGGTGACACCAAGACAGCTATAGCAGGAAACGCACTGCCCTGTTTAAATACAGCACGGGAACacgcgtgtgtgagagagagagaactcaTCTCCAAGCTACTGTTGTAGGCCCTTGACCCTGGTAATGAACTTGCTACTCTGACAGCAGGGAACAAGACCCCACCCCTCTGGAGTCTGGCTAACACTAATGGAGTCACTGAGTGAGCTAAAGGAATGGTTGCCAGgccttatacattttaaatacacatgtatttttttttattgacgttttgtttgtgtgtgggcCTGGCATGGTATCGAGGGCAGGGGGGTTGCTCACCTTCCTTGGTGGGCAGCGGGTTCTTCTCCTTAGTGTTGGCCTTCTTTAGACACTTCTTGTCAAAGTTCTGCACTTCCTCATTCACAGGGTTGTTATCACTCATGTTGGCAGATGTCTTGTCAGCAGGCGATTCCTCGATAAATTCCTTGTTAAGGTAAGACTGAGTGCGCAGCGTTACCGAGCAGCCTTTAAATAGCACAGCGCGCCCGACACCACCTTAACACAAGCCCCGCCCCGC
>TU107362
CCGCAAAGAAACACAGCAGCttaaattttaaaacattttgattttattttataccaaaaaaaaaactctttaaagtataacaaaaaaaaaaaaaatttaacgGCACCAGATACAGAAGTCGCATTACGTGGAATTCAGAGCGAGCTGATGCGGTCTGGGTGATATTCTCACACAAGCACTGCAAATCCTCCCCGTTGCCGTCAGGCCCCTCCCTCCATTCTTCCTCAtctctttcttcctccctcACCCTCTTTCAAGAATTCATCACAAAGCAGTAATTGGTTTATACAGTGGCATACTTTTATGGCTTTAGACTGTGCCCCTAACACCCCAACTACAAACCTCAGTATTTCCACACACCCTCCCCCTCCCCGACGTGCCCCGGTGTCTGGATGCCATTAAAGTGAACATGTTGAGATGGAATACAGAAGCAAAGTGACAGACAGAAGAAGTGTCCCAGCGAAGGAGTGTGAGCAGGCACTGTTCACTTGGATCCCTCCGCACAGCACTGCTTCTTCTCCTGCTCAATACTTCCTTGGTGGGCAGCGGGTTCTTCTCCTTAGTGTTGGCCTTCTTTAGACACTTCTTGTCAAAGTTCTGCACTTCCTCATTCACAGGGTTGTTATCACTCATGTTGGCAGATGTCTGTCAgaacagagaaagagggaaagaggaaTGAGaggatacatacatacataacatacttttatttgttctgcagtttttttttttttttttttttttttaaagagcaaatCTAATCTGATTGAAACCCAAAGTGTTCAACAATTCTCCCACCCTTAACCACAGTTGCCAACATGCCTCCTGTCAGACTGGAGAGCATTCTTATTTCAGGAACATGGAGCTGTGGGGTTCTGGCTCGTCTCAGTGCACAGGGTTCCAACCCGTGCGGTCCCTGGATCAGGTGCACCTGGCTGGAGGACTGAGAACCACAAGAACAGCTGGCAGAGAGTAGCAATCTCTCCTGCCCCACCCAGCCCTGCCTTTTTGGCAAACACACACCTGCTTCAAGGTGAACTTTAATCTGATGCAAAGAAACAGAAGTCCCACCTCCAAGCTGTTATTTTgtgaagggattttttttttttttttatatataatggcAAGAGTGTGAGGTCACCGTTTTAAGGAGTGGAGCTCTTAGCTGCTCTCCCAGGCCTCTCTTACAGACACGcctaaattacacattttcacactTCCCCCCCCAACAAGGCTGTGCAGCCCCTTATTGCACCAGCCTTATTACACCACCTTGTACAGAGTATTCTTCCACTGTTGCCCTGGATGTGATAAGGGCGGGTACCCCAGTAAACCTGGTGCGAAGGAACGGTTCTGGTAAATACACAGGGAAGGGGCAGTGAGGTCCTGGGCATGCACCAAGAGGTGTGCTGGACTCAGCGGTGGACAGCGGGGAAAGCCTTGGCACCGCAAAGCACAGTGAACTAAAAAACTATCCCAAATGCAAGAAGGGGTGAACATTCCCGATGCTAACAGACTGTGCTGGACGTTCAGCGAGCCAGTTAGCTCAGCTCTACAGTGCTTAGCCTGTAGAGCCTGCTTAGCCTGCTTGCTTCACCCGTGTTCCTGTCCACCCCCTGTTCCCGCCTGCTCCCTGCACTAAGTCTCGCACAGCCCTGCTCCCATGCTTGTCACAGGCAGGAAATATCAAGCCCCTGGTGGTGGAGGAGTAGTGCAAGAGCCTGCAACTGGCAAGATCTAANNNNNNNNNNCCCCCCCCCCATCGACCCTACCTCTTCTGCAATCTGCAATTCCAACAGAGGAGGCTGACAGATGAATGGTAATGATAATACAAACTCAAATGCAAGATTTTTTTATGCAAGGAAGTCAATATAAATAGATTCCACAATGACGTGTTGGTACAGTCCCGATAGCTCTACATGACTTTCCAGTGCAAACAACCCCCGACTACAGTTATGAGTCACCCGGCCACAAGGCCAGGGATACACAGTGCAGATCACAGTGATTTACGCCAGATCGGTGGCTTCAGTCGGCACGCCAGTAACACTAATCCTTCATCTCGAGgtccttcttctccttcactGCACACAggataaaaataactgaaaaaataaccaacaaaatcaaaaactcGTATTCAATTGAAAACGGTTCCAATCATGCAAGCGGAGGTTGTTtaacacaaattacacaatcaCTCGGACAggctccaaaaaaaaaaagaatgcattaTAATATCCAAGAGAAGCGAGTCTCTGCAGCAGGCCGCAGTAGCTGGGCCGGGCTGGGCCGGGCTGGGCCGGGCTGCAGAGTGCGACCCGTCCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107359 False 1847 lncRNA 0.48 2 17581307 17585472
TU107362 True 2328 lncRNA 0.47 2 17581307 17584713

Neighbor

gene id symbol gene type direction distance location
AMCG00021440 znf711,LOC107569605,LOC107684921,LOC107746145 coding upstream 74177 17494793 ~ 17507130 (+)
AMCG00021439 NA coding upstream 88648 17483091 ~ 17492659 (+)
AMCG00021442 NA coding upstream 144709 17430466 ~ 17436598 (+)
AMCG00021443 NA coding upstream 153104 17427517 ~ 17428203 (+)
AMCG00021436 NA coding upstream 161485 17404018 ~ 17419822 (+)
AMCG00021451 NA coding downstream 447719 18033191 ~ 18050404 (+)
AMCG00021450 NA coding downstream 476149 18061621 ~ 18067774 (+)
AMCG00021453 NA coding downstream 523606 18109078 ~ 18112221 (+)
AMCG00021454 cetn2,LOC108436166,LOC107710936,LOC107663123 coding downstream 582375 18167847 ~ 18170544 (+)
AMCG00021455 NA coding downstream 591708 18177180 ~ 18188162 (+)
G86007 NA non-coding upstream 48487 17532619 ~ 17532820 (+)
G86006 NA non-coding upstream 54181 17526726 ~ 17527126 (+)
G85999 NA non-coding upstream 67686 17513128 ~ 17513621 (+)
G85993 NA non-coding upstream 72012 17509085 ~ 17509295 (+)
G85992 NA non-coding upstream 72224 17507526 ~ 17509083 (+)
G86020 NA non-coding downstream 29142 17614614 ~ 17616453 (+)
G86034 NA non-coding downstream 62802 17648274 ~ 17648531 (+)
G86117 NA non-coding downstream 637363 18222835 ~ 18226242 (+)
G86118 NA non-coding downstream 643993 18229465 ~ 18229666 (+)
G86202 NA non-coding downstream 963956 18549428 ~ 18549759 (+)
AMCG00021441 NA other upstream 107911 17470325 ~ 17473396 (+)
G85869 NA other upstream 577176 16997877 ~ 17004131 (+)
G85787 NA other upstream 867269 16656644 ~ 16714038 (+)
G85764 LOC103366846,LOC106930986 other upstream 988334 16590181 ~ 16592973 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other upstream 1507686 16063499 ~ 16073621 (+)
G86121 NA other downstream 663018 18248490 ~ 18249686 (+)
AMCG00021472 NA other downstream 1461577 19047049 ~ 19055103 (+)
AMCG00021485 NA other downstream 1694293 19279765 ~ 19294779 (+)
G86407 NA other downstream 1914328 19499800 ~ 19501242 (+)
G86601 NA other downstream 2757138 20342610 ~ 20401249 (+)

Expression


Co-expression Network