XLOC_006239 (bsdc1)


Basic Information

Item Value
gene id XLOC_006239
gene name bsdc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 45980163 ~ 46000113 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012236
CCAATTGAACTACATTGCTACTTTTTACCGCAATGTATCGGTTTACATAGCTGATagagttattaataaattattgtcaCGTTGTTTAACGTGGTGTGCATGCATATTATTTTGACGCGCTGGTAAGGTCAGAGTTCAGGCCACACTGATGTCGTCATGCGCTGAAGATGGCAGACGGGGAAGGAGGATGGTGGGGAGGCTGGCTGACACAGAGCTTTCAGAGCGTCAAAGACAAGTCAGCTGAGGCGTATGAGTTTATAAAACGGGACCTGACCGAATTCTCCAGCGTGGTCCAACATGACACGGCATGCTCTGTTGTTGCAACAGCGAACGCAATTAAAAGCAAACTGGCaGTTGAAGGTTCATCAGAGACCACGGAAAAGGTGAAGAAGGGTATTACAAACATACTAGGCGTGATCACAGACACTTTAGCCCCGCCTCCAGACAAGACCATTGACTGTGATGTCATCACTCTGGTGGCCACTCCCACGGGCACAACAGAGGTGTACGACAGCGGCAAGGTCAGATGCATTCATCCTTCACCCGCTGCAGACGAGCTCTCTCAGAAACTCTCAGACACCGGTCTTCAGGAGACGTTCCCAGAGGAGAGACCTGCCCCCCGTGAAGAGACCGCCAGAGAGGACATGGCTCAAGACTTGCGAGTGTTTGAGCTCAACTCAGACAGCGGCAAGTCCACACCCTCCAATAATGGCAAAAAAGGTTCAAGTACAGATGTCAGTGAGGACTGGGAGAAGGATTTTGATCTGGATATGACGGAGGAAGAAGTTCAGATGGCTTTGTCGAAAGTAGACGCAACAGAAGAGTTGGAAGATGAGGACTGGGAGAACTGGGAGTGAGATTCTGGTGGATGGATTTCTGGCCTGAAATCGACGCGAGACGTTGCTGTTCCCAAAGTGAACCATGCTTAATGTATTTAAATCCTAGTCTACGGCCCCACGTGTTCATTCAAGCAGTCAAGTGAGCGGGTCACGTCCTGCGAATGAAATTTACATGCTAGCTAAACATGTCTGAAGTGTGCTCTTTAATCATTTGCTGGCCAAGAAACGATCTGCTCTCAAAAAACGACCAAGTCAAACACTAAGACTGTTCAGAGAAAACCTGTATGGGTTAATGAGGAGAGGTCATCTTGTAATTACCATTTGTAcctgctgtgtgtacattatcGTAATTCTTCTTCTTTGGAGATTTCAGCGGGAGAAATTGCAAATTAACTGCCGGGGCTCCTGGTTAGCTGTAATCTATTATGCTGTTCATCATTCTTATAGGATTAGAAGATAATCCTTCACATGAAAAATATAtgtaagttatgttttttttttctttttctggcatATAGATTTCTTTTTAAGTTAGCTTCTTATGAAATACTAACATCTTTAATCTTATGCAAGTTATTCTAGCATTGAGAATGCGAATGGAGGGATGTTTCATTCATTCTACTGATGCTCCATGGCCTTGTTCAATGTGGTGTGGAAtgaaaattatttcatgcaaaatttCGACAAAAAAAGTTACTATTTCACTAAACGCACTTGTTGTTTCATGTGCTGTCCA
>TCONS_00012235
CCAATTGAACTACATTGCTACTTTTTACCGCAATGTATCGGTTTACATAGCTGATagagttattaataaattattgtcaCGTTGTTTAACGTGGTGTGCATGCATATTATTTTGACGCGCTGGTAAGGTCAGAGTTCAGGCCACACTGATGTCGTCATGCGCTGAAGATGGCAGACGGGGAAGGAGGATGGTGGGGAGGCTGGCTGACACAGAGCTTTCAGAGCGTCAAAGACAAGTCAGCTGAGGCGTATGAGTTTATAAAACGGGACCTGACCGAATTCTCCAGCGTGGTCCAACATGACACGGCATGCTCTGTTGTTGCAACAGCGAACGCAATTAAAAGCAAACTGGCaGTTGAAGGTTCATCAGAGACCACGGAAAAGGTGAAGAAGGGTATTACAAACATACTAGGCGTGATCACAGACACTTTAGCCCCGCCTCCAGACAAGACCATTGACTGTGATGTCATCACTCTGGTGGCCACTCCCACGGGCACAACAGAGGTGTACGACAGCGGCAAGGCTCGACTTTACAGTCTTCAAGCTGACCCTGCTACTTACTGCAATGAGCCTGATGgCCCTCCACAGCAGTTTGACTCCTGGCTGTCCACTTTCAGTTTGGAAGAGAGGAAAGCAGAGATTTCTGAACTGCTGGTCAGCAGTCCTGCAATAAGAGCCCTGTATACTAAAATGGTGCCGGCAGCAGTGGCTCATGCAGAGTTCTGGCAGCGGTACTTCTATAAAGTGTTCCAGCTGGAGCAGGAGGAGGCCAGGAGAGTAGCGTTAAAGCAGCGAGCGGAGCAGACGGACCATTCTGAGAGTCTTGGCTGGGAGGAAGAAGACGAAGAAGGTGAGTTTCTCGGGGCCACGTCTTTATCCCGCCTGGACTTCACACCCCCTGTTGAAGAGTCTCGTGTCCCTGCGGTGACTGTAGCGGACACTCCTGAAAGCTCTTCTCCTCCGCAGGCGGTGGCTTCTTTAAGTAATGTAGCATCAGACGTCACTCCGTCTGTGAGCAGTGACAGCGTCAGCTTTCCCACCCAGATCGAGAACCAAGCGGAGTCTGTGACCATCAGAGTCACGCAGCCTTCACCCGCTGCAGACGAGCTCTCTCAGAAACTCTCAGACACCGGTCTTCAGGAGACGTTCCCAGAGGAGAGACCTGCCCCCCGTGAAGAGACCGCCAGAGAGGACATGGCTCAAGACTTGCGAGTGTTTGAGCTCAACTCAGACAGCGGCAAGTCCACACCCTCCAATAATGGCAAAAAAGGTTCAAGTACAGATGTCAGTGAGGACTGGGAGAAGGATTTTGATCTGGATATGACGGAGGAAGAAGTTCAGATGGCTTTGTCGAAAGTAGACGCAACAGAAGAGTTGGAAGATGAGGACTGGGAGAACTGGGAGTGAGATTCTGGTGGATGGATTTCTGGCCTGAAATCGACGCGAGACGTTGCTGTTCCCAAAGTGAACCATGCTTAATGTATTTAAATCCTAGTCTACGGCCCCACGTGTTCATTCAAGCAGTCAAGTGAGCGGGTCACGTCCTGCGAATGAAATTTACATGCTAGCTAAACATGTCTGAAGTGTGCTCTTTAATCATTTGCTGGCCAAGAAACGATCTGCTCTCAAAAAACGACCAAGTCAAACACTAAGACTGTTCAGAGAAAACCTGTATGGGTTAATGAGGAGAGGTCATCTTGTAATTACCATTTGTAcctgctgtgtgtacattatcGTAATTCTTCTTCTTTGGAGATTTCAGCGGGAGAAATTGCAAATTAACTGCCGGGGCTCCTGGTTAGCTGTAATCTATTATGCTGTTCATCATTCTTATAGGATTAGAAGATAATCCTTCACATGAAAAATATAtgtaagttatgttttttttttctttttctggcatATAGATTTCTTTTTAAGTTAGCTTCTTATGAAATACTAACATCTTTAATCTTATGCAAGTTATTCTAGCATTGAGAATGCGAATGGAGGGATGTTTCATTCATTCTACTGATGCTCCATGGCCTTGTTCAATGTGGTGTGGAAtgaaaattatttcatgcaaaatttCGACAAAAAAAGTTACTATTTCACTAAACGCACTTGTTGTTTCATGTGCTGTCCA

Function

symbol description
bsdc1 Orthologous to human BSDC1 (BSD domain containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040905-1 Orthologous to human BSDC1 (BSD domain containing 1).

Ensembl:

ensembl_id ENSDARG00000052623

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012236 False 1575 mRNA 0.44 7 45980163 46000113
TCONS_00012235 True 2124 mRNA 0.47 11 45980163 46000113

Neighbor

gene id symbol gene type direction distance location
XLOC_006238 olig4 coding upstream 11907 45967179 ~ 45968256 (+)
XLOC_006237 BX936305.2 coding upstream 21695 45942158 ~ 45958468 (+)
XLOC_006236 NA coding upstream 48627 45931157 ~ 45931536 (+)
XLOC_006235 NA coding upstream 103193 45871425 ~ 45876970 (+)
XLOC_006234 BX914200.1 coding upstream 136224 45840427 ~ 45843939 (+)
XLOC_006240 marcksl1a coding downstream 177365 46177478 ~ 46180510 (+)
XLOC_006241 CABZ01022272.1 coding downstream 227600 46227713 ~ 46227829 (+)
XLOC_006242 tmem63ba coding downstream 718405 46718518 ~ 46796020 (+)
XLOC_006243 CU695232.1 coding downstream 803866 46803979 ~ 46818627 (+)
XLOC_006244 mtrf1l coding downstream 927237 46927350 ~ 46937057 (+)
XLOC_006228 NA non-coding upstream 507480 45455745 ~ 45472683 (+)
XLOC_006246 NA non-coding downstream 986634 46986747 ~ 46987182 (+)
XLOC_006248 CR847786.1 non-coding downstream 1049799 47049912 ~ 47050026 (+)
XLOC_006249 NA non-coding downstream 1189021 47189134 ~ 47453908 (+)
XLOC_006250 NA non-coding downstream 1227123 47227236 ~ 47229296 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000228_00307063_00312064 BSDC1 coding CI01000228 null 307063 ~ 312122 (+)