XLOC_006228


Basic Information

Item Value
gene id XLOC_006228
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 45455745 ~ 45472683 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013678
CTGTGCTCCAAAACAAGCTTCATCAGATTCTGCGAGGAGGATTTGCCGATGGGGACCCACTGTCCAAAAGGCCTCTTGTACGGCACGATGTCTGCTCTTGATGTTACCTTACTGTCGCTGAGTGTTGGACTGCTTGATGGTTTGGCGATGGCATTCTGCAAATATAAAGAGGCAAGATCAGCTTACATATTTCAGTACATTATTAGGGGCTGCTCACACAATGTATTTCCTCTCCAACATGCAGCTTTTCTATTGTCTTATATCGTAACACACAAATATGTTTGACCGTTAAGGCTCGTACAGACCAGGATGCTTTTTGCTCACGTTTATcatcagcgtttttttttttttttttaagacactttgcTGTAATCCCAGACAATTTTCATGGGTGTTGAGCAGAGTGAATGCACAGAATTACCTCCTGACATTAGATGGCACTTAATGAACTTGCAAGTCACAAAActtaaaagaaaaagtaaaatgaaACTCACTATCAAAACCTATTTGCGACTCTCCACTCCTACTGACATGACTGTAGTTGCTGTTACTTTTATCATAGAGCTTTTTGTGTCcaaaacctaataaaaaaaaagcagctcCATTTTCATTTTGCCTCATCTTGTTCATGCATCATCTTCATCATTGAAACTGGAATCACCTCCACTTAAGTGCCTTTAAGTGGTGATTAATGTAACTGTAGTAGCAGCTCTGGGCACAAAACAAAAGTGGCAAACTAATTGGAGAAGTTTTGGTGATGCACATTAAACAAAGCATGAgacgtttctttaaaaatgacaccGCCGTTTTGTGCATTGCTGTTACCGATCACATCAGCGCCTTTAGTTTAGTCACGAGGCATTAAATGTAGACAAAAAGTGCAAGCAAAAAGAATACCGGTGTGAATGGGCCTTAACACTCGCATCTTTTGAAGCGCCGTGTTTCTTAGATCTTAAACTGTCACACGCAGCAAATCATTGAAAGCTCATCACTGTCAGGTccaaaagcagtggaccaatcagaagagtgGAGGCAGCCACTGCAATTATCAGTTTATTATACAGTTACCATGACAATTGTTTTATTTACCGTTATATACGGAGTTACAAGATGTATCTTTCAAGTGCTTATTAGAGCATGTTTTTCCTATTTCTAAAGGTGAAATCACACCAGACACAGATGAAGTGTCAGCTGCGAGTGATttaaatgttaagtcaatgcaaattcACGGATAGACATCTTGTGGCAAAAATTAAGCGACGCAAGATGAGCGTCTGATGCGCAAATCACTAGAGTTGGAAAATCTTAACCTTAGCAGACATTTGTGCTGCGCTAACCAATCATTAGCTTGCTTTTGGAAGGGCGTGATGTTGTTAGTGTCCCGAGGGGAAATTCTCCTGCCGACATCGGTCAACACTTTATCAAACTGGGCTAACACTaaaaagcctccatcatccagataTAGTTGGTGAAGGAGTTAATGAACAGAGCtgagtgcacctctgaaagcatctaGTGGACACAGACTAAATAAAagtaatcaaacccttgggaacaactgtggttggaaccaaaATTCAAAATGACTGTCTTCTCttgactcctctcaagcggtggatttctacattctgattgcttgccccTGAATGGTGTCATAGCCCATTACCATAAACTTGACTTGATTTTAACTTTCCTCAACTTTTACACTGAcgaagacaaaataaatgacttcggcctactttgacgctctcgcccctttcggtgtgaacgtagtCACAATCATCACATTTGAGCAAGTTTTCATGAACTTACATTATTGCTGAAGACAATTTGCTTTCTCTTGGGTGATGTCTGAGCAGTCTCTGCCTCATCATCAGCAGCACCACCACCATTTACCTTAAGACAGAAAAGAGAAACAAGAATAGTGAAAACCCTGTTCATTTGATGTAAACCTCACATGATTTTCACTTCTAAAAGAATACATCATCTATTGGGTTCAGGTCATGCAATGGTAGTAAACTGAAGGGACTTTAATAATGCTAGAGTTGCCCTTCTAATCTGTAACACCACATGGGTTTTATCAGtttacattttcagtaatataaTAAAGCTTTAGAAACTATAAAAATCTATAGACAGAGGCTTTGGTTACTCTGCATTCAATTCCAACTTGTTAAATCAGACCTTTAAGACACTCAAGCCATTTTAAAGTAATGAATTTACTCATGCAGTATCTAATATAGTTGTTCAATTGTATGGAAGAGTCAACTcagaaacaaaatataataaaaataaaaacatccaaaGTATAGTCATTAGCTTTTAAAAACAGCACGGATGccatcttttttttcttgtactaagattaatttaattcaactgtGCATGATGCTATACATTTGTGAAAAGAAAATCTAATAATTTGGCTTTTTGCAGTTTGTTTGAACAAAGCTAAAATAATCAGACAAAAAGAGACGGTATATTTTTCCAAACCCCATCCATCACTGTAGACGGAGCTGTCTCTGGTCTTCACGCACGCTGAACAGAGGAAGACTCACTGAGGAATGACAATGCAACCCAGTTCAAccatcaaaacaaacaatttcCTATGCTTTAATTAATCAGAGTACACTACAATTCAAACGCTTGAGGCAGCAAGATTTTTCTTGATATCTCATAGACTAacaaatgctgcatttattttgaTCAAAGAAATACAGTAAAGACGCAAATACTTTAATTGACACTGTGATAATTTCAGCAAAGTTAAATGAACAGATCAAAAGGAAATCTTTTATCATTTTACTGTAATCTTTGCTCAACCTAATGCCATCCTTGCTAAATAAaagcagtaaaaataaaaatgttactgACCCCAAATGTTCATATATGTGCAGTTGTGTTGTAGCTGAAAGTGGCTCAGCTCTATGTAAGGTAAATTACACAACTGCATGTAGTCTGATTTAATTGGACATAAAGCTACCTCTAACATCATACACCATTACTTATCCTTTGCAGTTGTGCATTTAAGACTTAAAGCTGGTGTCAATCAAGTCATGTGACCTCCCCCTCTGTCCCTCTATGTCCAAAGGGTGGAGGAGTTTCAGCTCTACAGGAACAGAAAcgatacaaaaaaaacaaacaaaagcaattgAAGCTAAAATGTCACTCCTCAAATCAGTGAGAGGAATGTGTTCAtacattcgcacacatacacacacactcagtatTACATACTCTTTAACGTATACCGTTACCTAATCCGGACATGAGCTGTTGATCATTCCATTAAATCCATCAGGAAATATCATTCATGTCTGAGGAGACAGATTAAACGACCCAAGTTGGGTAAATACAAATGCGCAATCACATTATATATAGACGCATTTCAATGTGTTAGTATCCCAAGATCACATATCACTTGAAAGTACAGAATACTATAGGACATTCATGCAACATTCCACACTGGGTGTGTATTAGTGTAACATTTGCAGTTGTGTGTGAGACTCACCTGAGCTGGTGTTTTCTGCGGTGCCAGGTCAACCCTCACCCTTTCCTCTTCATCTGATGAAGATCTCCTCTTTCTCTCCTCCTGCTGCTCCATCTCCTTCAGGCTCTCTGGCAGCTCGAGGTTCTGCACTCCCAGAATCCGGGCAGCATTTGCCTTGGCCACATTCAGCAGATACTTCTTCTCTGTGGATGACAAAAAAAGGcaattaaaatgtgaaaatgttgaACTTTAAAGGCACAGAatgtaattttcaccactagagggagcATATTCACAATAGACAAATGCACATTTTGTTGATGGCGTGACTGATCAAGGAACCATTGTAGTTTGGGTTGTCATTACATCTTACAGGACTCTAGTGGtgcaaagattttaaaaaattagattCTCTTTTTATGCAAGTAGAATGGTGAAGCTGATGTTACCTTCAAGGCTGAGACGGATGGAGCGTTCGCGGCTGCGGGAGCGGCTTCTGTAGGGTCTGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013678 True 4000 lncRNA 0.39 2 45455745 45472683

Neighbor

gene id symbol gene type direction distance location
XLOC_006227 syf2 coding upstream 12737 45431660 ~ 45443008 (+)
XLOC_006226 znfl1g coding upstream 119040 45332203 ~ 45336705 (+)
XLOC_006225 NA coding upstream 163991 45271632 ~ 45291754 (+)
XLOC_006224 NA coding upstream 440146 45009947 ~ 45015599 (+)
XLOC_006222 zbtb8os coding upstream 566795 44857087 ~ 44888950 (+)
XLOC_006229 mgst3b coding downstream 3498 45476181 ~ 45482003 (+)
XLOC_006230 tmem50a coding downstream 12502 45485185 ~ 45495562 (+)
XLOC_006231 maco1b coding downstream 51792 45524475 ~ 45572062 (+)
XLOC_006232 ldlrap1b coding downstream 109708 45582391 ~ 45645167 (+)
XLOC_006233 si:ch211-62a1.3 coding downstream 236697 45709380 ~ 45774815 (+)
XLOC_006223 CR786566.1 non-coding upstream 590035 44865594 ~ 44865710 (+)
XLOC_006221 NA non-coding upstream 619282 44822196 ~ 44836463 (+)
XLOC_006220 NA non-coding upstream 623219 44813904 ~ 44832526 (+)
XLOC_006234 BX914200.1 non-coding downstream 367744 45840427 ~ 45843939 (+)
XLOC_006235 NA non-coding downstream 398742 45871425 ~ 45876970 (+)
XLOC_006236 NA non-coding downstream 458474 45931157 ~ 45931536 (+)
XLOC_006237 BX936305.2 non-coding downstream 469475 45942158 ~ 45958468 (+)
XLOC_006241 CABZ01022272.1 non-coding downstream 755030 46227713 ~ 46227829 (+)

Expression


Co-expression Network