XLOC_006232 (ldlrap1b)


Basic Information

Item Value
gene id XLOC_006232
gene name ldlrap1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 45582391 ~ 45645167 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012227
TCCGCCCGCCGTGGCGAGCATGTCCGTGCATCCACCCGGGATCATCCGCGGAAAAGGAAGAATATCAGCGGCTGTCAGAAAAGTTTTCCTGCGGGAAGAGGCTCGTGTTCGCTCGGGCTGAAGGATCGCCGGGGGATCGCGCTCTCAGGATTAATAATCGCCACAATAAACTGAGCTATTTCTGTCATGGACGCGCTAAAATCAGCCGGACGCGCGATCATTCGCAGTCCCAGTCTGGCGAAACAGTCCTGGATCTCTGGAAAGCATAAAAagcTGCCGGAGAACTGGACGGACACACGGGAGACGCTATTGGAGGGGATGGTGTTTCAGCTGAAGTATCTGGGCATGACGCTGGTGGAGGAACCCAAAGGAGAAGAGCTTTCAGCCGCTGCCGTCAAGAGAATCGTCGCTACTGCTAAAGCCGGTGGGAAGAAGCTTCAGAAGGTGACGCTGAAGGTTTCTCCCCGAGGGATCATTCTCTACGACAGCGCTTCAAACCAGCTGATAGAGAACGTGTCCATATACAGGATATCGTACTGCACAGCTGATAAGATGCATGATAAAGTGTTTGCCTACATCGCTCAGAGTCAACGCAACGAGACGCTGGAATGTCACGCGTATCTCTGCACCAAGAGGAaagtgGCTCAGGCGGTGACGCTGACGGTGGCTCAGGCCTTTCGTGTTGCTTTTGAGTTTTGGCAGACTGCTAAAGAAGAGAAAGAGAAGCAGGTGAAATGTGGCTCAGATGGAGAGGCAGCCAGCAGCTCTCAGTCCGAGAGTTCAGCCAGTCTGAGCAGCATGAAAggagAGGTGGCCACTGGGGATCTACTGGACCTTGAATGTGGTGTTAAAGATCGCTCAGGGAAAGACGCCGCACACCCTGTACAGAACCACAGCACAGAGAACAACAACACTGTATGGGAACTTGAGGATGGTCTAGATGAGGCTTTCTCAAGGCTCGCTGAGTCTCGCACTAACCCCCAGGTGCTGGACATTGGGGTAAACCCTCAGGACTACAACCCTGAAGACTGCTTGTCTCCGACTCACTGGGACAAAGCCGACAGTGAAGCGGCGGATGCAGAGGATGCGTTTGGATTCTGATGATGAGCGGCTGGTGTGAGCTAGAGCTGGTGAAGCAACACACAAAGGGAATGAATGAAGCGGCGCTGCTCGACTCTCACTCACCTGCGCCCTCTGGTGGCCAGAGCTGAACCTGCGGTCTGCAAACCCAACCTAATGACTTCAAAAAAGCACAGACCAAAGCAATACAGTAGAAAGTATTTCCCCTTCAATTTCCTTTtaagtacatttatattttattgccaATTAGttactttgtgttttattttgtatgtatgtgactgtaaaatgtacagtgtCCTCCACTAACATTGGCCTACCGTGTAAATAGCAgcaaagaagacaaaaaaaaaagagtctttaATGTTTAGCGTTAGCGATAACCAGAATTTGCTGCAGACTTATCAGTATGATaatgtatttccaactgaaattgAAGATTGAGTAGGAGATGAGGTTTCAGAGGTGACGTGGCTAagaataagggtgctttcacacctgtcagttgttccgaaacagagattaaaattgttac

Function

symbol description
ldlrap1b Predicted to be active in early endosome. Human ortholog(s) of this gene implicated in autosomal recessive hypercholesterolemia. Orthologous to human LDLRAP1 (low density lipoprotein receptor adaptor protein 1).

GO:

id name namespace
GO:0005769 early endosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1012 Predicted to be active in early endosome. Human ortholog(s) of this gene implicated in autosomal recessive hypercholesterolemia. Orthologous to human LDLRAP1 (low density lipoprotein receptor adaptor protein 1).

Ensembl:

ensembl_id ENSDARG00000039750

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012227 True 1615 mRNA 0.50 9 45582391 45645167

Neighbor

gene id symbol gene type direction distance location
XLOC_006231 maco1b coding upstream 10329 45524475 ~ 45572062 (+)
XLOC_006230 tmem50a coding upstream 86829 45485185 ~ 45495562 (+)
XLOC_006229 mgst3b coding upstream 100388 45476181 ~ 45482003 (+)
XLOC_006228 NA coding upstream 109708 45455745 ~ 45472683 (+)
XLOC_006227 syf2 coding upstream 139383 45431660 ~ 45443008 (+)
XLOC_006233 si:ch211-62a1.3 coding downstream 64213 45709380 ~ 45774815 (+)
XLOC_006234 BX914200.1 coding downstream 195260 45840427 ~ 45843939 (+)
XLOC_006235 NA coding downstream 226258 45871425 ~ 45876970 (+)
XLOC_006236 NA coding downstream 285990 45931157 ~ 45931536 (+)
XLOC_006237 BX936305.2 coding downstream 296991 45942158 ~ 45958468 (+)
XLOC_006225 NA non-coding upstream 290637 45271632 ~ 45291754 (+)
XLOC_006224 NA non-coding upstream 566792 45009947 ~ 45015599 (+)
XLOC_006223 CR786566.1 non-coding upstream 716681 44865594 ~ 44865710 (+)
XLOC_006221 NA non-coding upstream 745928 44822196 ~ 44836463 (+)
XLOC_006241 CABZ01022272.1 non-coding downstream 582546 46227713 ~ 46227829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000228_00109773_00120406 LDLRAP1B, LDLRAP1, ARHB coding CI01000228 null 107468 ~ 120526 (+)