XLOC_006225


Basic Information

Item Value
gene id XLOC_006225
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 45271632 ~ 45291754 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013677
CTGCACTCGATGCTGGAAAAACCCAGAGACACGCAGCACATTCGCAGAAGGGTTGGGGGACATTCAGAAGCGTGCAGCATAGCGAAAGCACGTCTAGAAATGAATCAGAGCATCGCAGAATGACATATCAAAAAGCCTGACAGTTCATCAAAAAACTCTAATCTAAAGACTTCATTGTCCCATCTGAGAAACCCAGAAGACATCCAGGAGTTCCCGGCCCGCCTGTAGACATATTCAGATATTGATCAACCGGGGCCGGGTCTCGGGGGCaacagtcttaggagagaaccccagacttccctctccctatACACgttctccagctcctccggggagaTCCTGAGGCGTTCCTAGGCCAGCTCAGaggcatagtccctccagcgtgtcctgcgtcttccccgaggccgcctcacggtgggacatgcctggaacacctccctaggtaggcgtctaggaggcatccgaaacagatgcccgagccacctcagctgacttctctcgatgtggagaagcagcggctctactccgagctcctcgcCCTATCCCTGAGAGTTCGCCCTACCACCCTTTGAAGGAAACTtttgaagccaacagaacaacatcgtctgcaaataacagagatgaatTTCGAACTGGACCTCCTCCAGCCCAATGCTGcaccttgaaattctgtccataaaaattctgaatagaattggtgacaagggcCAGCCCTGCCAGtggaaacaaatctgacttattgctgacaatgcgaaccagactcctactctgttcatacagggacgagacgaCAAGTTTTAAACTTACAATTGATTATAAAAGACAGAACTGTAAATTGCTGTACACGCACAAGCAGCGGAATTTTTAATTTGCTCCTGAATCCGCTGCAAATTGCTGCTTTTTCTTTGACACTTGTGTTTCCCATGGCCCGTTGGAAAATATCTTTATATTAGGCTACTGTTCGGCCTGGATCCATCTCCCGATTATTCCATTCGAAGTTTACAGCTTTAACTCTCAGGGTTCGAAG

Function

GO:

id name namespace
GO:0072376 protein activation cascade biological_process
GO:0006956 complement activation biological_process
GO:0006959 humoral immune response biological_process

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013677 True 1027 lncRNA 0.49 3 45271632 45291754

Neighbor

gene id symbol gene type direction distance location
XLOC_006224 NA coding upstream 256033 45009947 ~ 45015599 (+)
XLOC_006222 zbtb8os coding upstream 382682 44857087 ~ 44888950 (+)
XLOC_006223 CR786566.1 coding upstream 405922 44865594 ~ 44865710 (+)
XLOC_006221 NA coding upstream 435169 44822196 ~ 44836463 (+)
XLOC_006220 NA coding upstream 439106 44813904 ~ 44832526 (+)
XLOC_006226 znfl1g coding downstream 40449 45332203 ~ 45336705 (+)
XLOC_006227 syf2 coding downstream 139906 45431660 ~ 45443008 (+)
XLOC_006228 NA coding downstream 163991 45455745 ~ 45472683 (+)
XLOC_006229 mgst3b coding downstream 184427 45476181 ~ 45482003 (+)
XLOC_006230 tmem50a coding downstream 193431 45485185 ~ 45495562 (+)
XLOC_006218 CT737192.1 non-coding upstream 887239 44384277 ~ 44384393 (+)
XLOC_006234 BX914200.1 non-coding downstream 548673 45840427 ~ 45843939 (+)
XLOC_006235 NA non-coding downstream 579671 45871425 ~ 45876970 (+)
XLOC_006236 NA non-coding downstream 639403 45931157 ~ 45931536 (+)
XLOC_006237 BX936305.2 non-coding downstream 650404 45942158 ~ 45958468 (+)

Expression


Co-expression Network