XLOC_006233 (si:ch211-62a1.3)


Basic Information

Item Value
gene id XLOC_006233
gene name si:ch211-62a1.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 45709380 ~ 45774815 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012228
CAAATTTTAGATATGTGAAAACCAAATATGACTTTGTGTatcaatttgcatatatttccatttATTAGAATTCTCTATGGGGTCTGTGTCTGATTAAACTTTATTCTTAAGCCATGTAGAATATAACAATATTCATGCCTTGAACACATACAAACTAAAATGTTACAGGATTTTTCAATTGCtgaatttcatgttttttttatgtttttgttttttaggttgTGAAGGCCTCTTGGCAGATGTTGTCTTCCTAATCGATGGGTCTGATAGTGTTAGCGCTGAAGACTTTGAAAAAATGAAAGATATAATGGAGTATGTTATAGAAAAGTTTGCTATTGGATCGGAAAAGGAGCGTGTTGCAGTAGTTCAGTATGGCACAAACCCAAACGAGGAGTTTTCCCTGAATGCATTTGATAATAAAGATAGATTATTACAAGAAATTAGAAATATCAGACAGGTGACGGGTAAAACATATACTGGGAAAGCTCTCACACAAGTTTTGCAGTCTTTTGACAAGTCTAAAGGAGGTCGATCCAGTGCTTTAAAGTTCTTGATAGCTCTTACAGATGGAGAAAGTAGGGATGATGTAGCCCTGCCAGCTAAAGCCCTCAGAGACAATTCCATCAACACTTATGCAATTGGTCTGAGACATGCTAACAGATCTCAGATTCTTGCCATTGCTGGATCCCATGGAGAAGTGTTTTATGAAGACGCAGTTGCTTCCCTGAAAGAATTAAGCAGTGAAGTACTTCTCAAGATCTGCAACACAGAATGCAAGACTCCAGAATTGATTGACATCATCTTCCTTGTGGATACGTCTGCATGGCCCAATATAGATGGTCTCCAGGAGATGATCAATTTAATGACGCATGTTGTAAGAAAATCTGTTGTCAGTGAAAAACGGGTGCGATTTGGTGCAATCACCTACTCCAACAGCCCTCAATTAGAGTTCACCCTGCAACAGTACAAGAGTCAGGCTGATGTTATGAGGGGTATCTCAAGCCTCAGACCTTTAGGAGGAAACAGAAACACAGCCCGGGCGCTTAACTATTCACTCTCCTATTTTGCCGAAATGCATGGAGGACGGCGGGCAAAGAATGTACCTCAAGTGCTCTTTCTAATTACAGATGGGAAAGTTAATGATTTAAATGGACTGAAAACATGGCCTCAATCTCTGGCAAGTTCCCAAGTTAATTTTTTTGCTATTGGTACTAAAGATGCAGAAGTGGCACAATTAAGAGAGATTGCTGGAGGGAATGGAAGAGTGCACTATGCTAGCACTTACCAGGGTCTGCGTGGACTGCAGAAAATCATCACCCAAGAGCTCTGCAATCTCACCAAACCAATCTGTGAGATGGAAGTAGCAGACCTCGTGTTCCTTATTGACGGATCAGAGTCCATTAAGCCGCCAAGTTGGGATATTCTCAAACAAACCATGATTGGCATTGTGAAAGAGCTGGACATTGCTAAGGACAAATGGCGAGTGGGTGTCGCCCAGTTCAGCGACATACTCCTGCATCAGTTTTATCTGAACACATACACTAGTTTCGCAGAAGTGGAGGAAGCCATAAACAACATTAAACAACGAAAGCAGGGCACAAATACGTGGGATGCCCTGAAATTGATCAAATACTACTTTACGAAAGAGAATGGGTCCAGGATAGAAGGAGGAGTGGCTCAGAATCTCCTGCTGATCACAGATGGAGAAGCTAATGATGAGAAAGATTTGAATGCATTAGCTGATCtcaaaaacaagaaaatagcAATAACTGTTATTGGGATTGGCAATGAGATTAAAAAGTCTGAGCTGCGTGAAATTGCTGGATCACCTGACCGGGTTCTCATCGAGACTTTTGAAAGCCTTGAATTGAAAACAACCATTAGGAAAGTGCTGCATTTTCTATGTGAATCAAACAGAAGTATTTCTGATGGTTGCAATATCCACATTGCTTTTGGGTTTGACGTAACGAGACGAACAAACACACAATCTCTGTTGAGCCCTCAGGCGGAAGCATCAGTTACTGCAGCTATCCGCCGAATCTCCTTGATGGGAGATCTGTGCTGCAGCAATAGAACAAATATCACTACTAAATTTGCCTATCGGCTAGTTTCTGGTCGAGATGCGTGCAAACTGGATTATTGTAACTTTGAGACGTACACAGAGGATGTGGTCAAGAAAGTGATGGCACTGCGGCCCACCGAGCCCCTTGCCTTTAACCAGTTTCTATTAGACTCCTTCAGAGAAATGTTTGGCACTTCTAAAGCCGAGGCGAAGATTTTGATAGTCTTCTCAGATGGCTTGGATGACAGCATTGCACGTTTAATGGCCGGCTCAGAGAAACTTAAGCAAAGTGGGGTCAGCGCTCTCCTCATTGTGTCTTTGGAGGGAATAATGGACGTTCACCAGCTGGAGTTTGGCAGAGGTTTTGGTTACATGGAGCCACTGACCGTCAACATGCTGAATTTAGGCGACGCTCTTATGAAACAGGTTGAAACAGTGGCGCTGCAGAAGTGTTGCGAAGTGCCTTGCGAATGCTCTGGAGCGCCTGGACCACGAGGACCCCCTGGACGCCCGGGTCAAAAGGGCTCTCCTGGTCAAAAAGGTCATCCTGGATTTCCTGGAGATGAAGGAAGTATGGGAGAGCGAGGACCACCGGGGTTGAATGGAACTCGGGGGCATAATGGCTGTCCTGGAAATCGAGGAATCAAGGGCAATCGAGGCTACACTGGAAACAAAGGTGAAGATGGCGAGAATGGCCTAGATGGAGTGGATGGAGAACAGGGTGATGTTGGCGTTGACGGCTTTTCAGGAGAGAAAGGAGACCTTGGCAGAGCTggTGTGAAGGGTTACAAGGGGAGTCCAGGACCTAAGGGACAGCGCGGTGTGAGAGGAGATCCTGGCATACCAGGAATAGACAACAACATTCCAGGGCCAAAAGGCGAATTGGGAGACACTGGGCTCCCGgGTGACCAGGGGCCTCCGGGACTCCCAGGCAGAATTGGAGAGGACGGTGGACTTGGTACTCCAGGAAGAAAAGGCCCTCCAGGATTGCCGGGTGAATCTTTAAATGAAAAAGGAGAACCTGGCCATCCAGGGCCTCCTGGTTATCCTGGACAAGTGGGACCACCAGGACCAAACGGATCCCAAGGAGAAAATGGCCATCCAGGTGTACCAGGTATCCCGGGTCCCTTTGGCCCTCCTGGAGGTGACGGTTCAAAGGGAGGTCGAGGACCCAGAGGGCCAAGGGGTCTACCAGGTGACCCAGGACCTAAGGGGTCCCGAGGACCAGCAGGATTCAGAGGCCCACAGgGAGAAGATGGAGGAGATGGATATGGACCGGCTGGATCAAAGGGACACAAGGGAAACATTGGGTATCTTGGCTTTCCAGGTTTGGAGgGCGAAGATGGGAACAAAGGGTCCAGTGGAATTAAAGGTCATAAGGGTTACCAAGGAAGACCGGGGAATGCTGGTCGTCCGGGTAACCCAGGGATTAAAGGAGAAAAAGGGTTGGATGGACACATGggTGAAAAGGGAGTTCCTGGAATCAGTCCAATGCCTGAATGTGACCTGGTTGAATATATACGTAAAAACTGTGGTAATGGTACCCGGTGTCCAGTTTACCCAACAGACCTGGTGATAGCACTGGATTTATCTGCTGGTGTGTCTTCTGAGGAGTTTGAGCGGATGCGATCTGCAGCTTATTCCTTACTGGAGGACATTTTCATCTCCGACACTAATTGTCCACAGGGAGCTCGGGTGTCTGTGATGTCCTACAGCAACGAGTCCAAAACTCTGATCCGATTCACGGACCACCTTAAGAAGCAAAGCCTTCTGGAAGCTTTGAATACAACTGCTAGAGAGAGAACCACCAAAAACAGGGACATAGGGCAAGCCATGAGCTTTGTCGCCCGTAACATCTTCAAGCGGGTCCGGAAAGGGATGCTTATGAGGAAAGTGGCCATTTTCTTCACAAATGGACCTTCGGAGAGTGAATCGAGGCTCGCTACAGCCATGCTGGAGTTTAAAGCGGCAGAAATCAGTCTTGGAGTGATCGCTTTAAATCCTGCTGATGATGTGAGACGAGCAATGCAGGTTGATGACACAGGAAGCTACATTATTGTTGATGGCAGAGGAGTCAATCGCATCAAACGCTGCATCATTTGTTTTGATCGTTGCAAGCCAGACCCAGTCTGTGGTAGAATTCTCAATCCGCAACCCCTGCAGATGGATATGGACTTGTCTTTGCTGCTGGACGGCTCTGATAACCTTAACACTCAACAATATTTACATTCAAAAGCGCTTCTATTGTCTCTGTTGGACAGAATCGGTGTGAGCAACGAGCCCAGTCGAGCAGACAGGAAAACCAGAGTGTCTGTCTACCAGCAGAGCTCCATTTATGGCTCCTCTTACCTCCACGAGGAGTTCAGCTTCACTAAATTTAAAGATCGCAACATCATGAAGCGCCACATTAGTAGTAGCTTAAAGCAAGTGGGTGGGACGTCCCATCCCGAGTTTGCTTTGGAGTGGTTGATCACTAACATTATCCTTAAAGCGGAGAGACCACGAAGCAAGCGGATGGTTGTGGCTGTTTTCTCCGCAGAGTCTGAGCACAGCAAAGCTCAGTTTGATTATTTGTCCCGACTGTGTAAGTGCCAGAATGTAGTTATGTTTATCCTGATGGCGGGACAGAGGTTCGACTGGAGACGGATGCAAGAGCTCAGCAGTTCTCCTCTAGAGCAGCACCTGGTGTTTTTGGATGATCAGGAATATGCCACACGCTTCCTGTATGCCTTCCTGCAAATGTTGCACAGAGGAATCCTACCCCACACACTCCCACAGCCCCGTGACTGTCGTGGTTTTGTGGTCAGGCCTGTTGACTTTGGACAGCAAACCACAGAGAGCCCACCGAGGCCCCCACCCATTCTGCCCACAGAGGCACCTACCGAAGGCGTCATCACAACTGATTTTCCTCAGGTTGAATATGAATATTATGAAGAGCAAAATACAGAACCAGAAAAACCAGAATCCACTGATGAACGTCTTACAGAGGAGCTCATAGAGAACCAGACTGAACCTCCAAAGACTAAAGCACGATGTTTCCTTGCGAGAGATCCTGGCCGTTTGTGTGGAACGTACGTGTCCAGGTGGTACTATAGAAAACAGACCAACAAATGCATACATTTCTGGTATGGCGGCTGTGATGGGAATGAAAACCGATTCTTGACGGAGGACGAGTGCCTTAGGGAGTGCGGCTCCACAGATGAAATTTCTTCCACAGAATCCAAAAATCTTCCTCAGGATCCCAACATTTGCCAGCTTGAGTCTAATGCAGGAAGTTGCAGCAACTTTACACTGAAATGGGCCTTCAACAGCCGCAATGGTCAATGTGTCCAGTTCTGGTATGGAGGCTGTGAAGGGAACGACAACCGATTCAACACTCAGGAGGACTGTGAGATTCGCTGTCTCAGGGCTAAGAAAGCACCTGCTAACAAAGCTAAGCCTTGA
>TCONS_00012229
TCCATTAGATGAAATTTCTTCCACAGAATCCAAAAATCTTCCTCAGGATCCCAACATTTGCCAGCTTGAGTCTAATGCAGGAAGTTGCAGCAACTTTACACTGAAATGGGCCTTCAACAGCCGCAATGGTCAATGTGTCCAGTTCTGGTATGGAGGCTGTGAAGGGAACGACAACCGATTCAACACTCAGGAGGACTGTGAGATTCGCTGTCTCAGGGCTAAGAAAGCACCTGCTAACAAAGCTAAGCCTTGATATTAATTTTTGAGGAATTCAGAGTCCATTTGTATACTCTTGGCAGCTTCTGGATTCTGCAAATGACAGCG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000112419

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012228 False 5506 mRNA 0.47 34 45709380 45774744
TCONS_00012229 True 324 mRNA 0.44 2 45772924 45774815

Neighbor

gene id symbol gene type direction distance location
XLOC_006232 ldlrap1b coding upstream 64213 45582391 ~ 45645167 (+)
XLOC_006231 maco1b coding upstream 137318 45524475 ~ 45572062 (+)
XLOC_006230 tmem50a coding upstream 213818 45485185 ~ 45495562 (+)
XLOC_006229 mgst3b coding upstream 227377 45476181 ~ 45482003 (+)
XLOC_006228 NA coding upstream 236697 45455745 ~ 45472683 (+)
XLOC_006234 BX914200.1 coding downstream 65612 45840427 ~ 45843939 (+)
XLOC_006235 NA coding downstream 96610 45871425 ~ 45876970 (+)
XLOC_006236 NA coding downstream 156342 45931157 ~ 45931536 (+)
XLOC_006237 BX936305.2 coding downstream 167343 45942158 ~ 45958468 (+)
XLOC_006238 olig4 coding downstream 192364 45967179 ~ 45968256 (+)
XLOC_006225 NA non-coding upstream 417626 45271632 ~ 45291754 (+)
XLOC_006224 NA non-coding upstream 693781 45009947 ~ 45015599 (+)
XLOC_006223 CR786566.1 non-coding upstream 843670 44865594 ~ 44865710 (+)
XLOC_006221 NA non-coding upstream 872917 44822196 ~ 44836463 (+)
XLOC_006241 CABZ01022272.1 non-coding downstream 452898 46227713 ~ 46227829 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location