XLOC_006231 (maco1b)


Basic Information

Item Value
gene id XLOC_006231
gene name maco1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 45524475 ~ 45572062 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012225
gaaaaaaacacaacaaccaCAGCGGTATATTCCTCAGCGGGACTGCCAATGTTTCCCGTCCAAATGAGACAGCACCCTGGACCATACTGCAGTACGTATTAAAAAGCCCGATTTAAGGGGGCGAGGATGAAGCGGCGCAATGCGGACTGCAGCAAGCTCCGACGGCCCTTAAAACGGAACCGAATCACCGAGGGGATCTACGGCAGTACGTTCCTGTATCTGAAGTTTCTGGTGGTCTGGGCGCTGGTGCTGCTGGCAGACTTTGTGTTGGAGTTTCGCTTCGAGTACCTCTGGCCTTTCTGGCTCTTTATTCGCAGTGTTTACGATTCCTTCAGATACCAGGGCCTGgCTTTCtcagtgttttttgtgtgtgtggcatTCACATCAGATATTATATGTCTGCTGTTCATCCCAGTACAGTGGCTGTTCTTTGCAGCCAGCACATACGTGTGGGTACAGTACGTCTGGCACACAGAACGAGGGGTCTGCCTCCCCACTGTGTCGCTATGGATACTTTTTGTTTATATCGAGGCAGCTATCAGATTTAAAGATTTGAAACACTTCCACGTGGACTTGTGTCGTCCTTTTGCAGCACACTGTATTGGGTACCCGGTGGTGACGCTGGGCTTTGGTTTTAAGAGTTATGTAAGTTATAAGATGCGTCTTCGAAAACAGAAGGAAGTGCAGAAAGAGAACGAATTTTACATGCAGCTGCTTCAGCAGGCCTTACCTCCAGAACAACAGCTCATACAGAGACAAGAGAGAGAAGCAGAGGAGGcagcagcagcagcggcagCAGCGGCATCCAAAAGCATTCATGATGTAGACTCTCCAGCTGTGGCACAGAACGGCTCGGCGGGCGGTAAAAAACCCTCATCCAACACATTACCAGAGCTGGAATACAGAGAGAAAGAGCGAGGCAAGAACGAGTCCAAAAAGCAACACAACCACAACCAGAACCATCACAGCAGCACCAGCAGCAGCATCTTACCATCAGTGGACAATAAAGCTCAGGAGATGGAGTACATGGAGAACCATGTGAACAGTAAGAGACTGAGTAGCTCAGATCTGCTGGGCAGCACTGAGaacctgctgaaagatgaacactcttcatcctcctcatcctccacctcctccaactccaacaaaaattacaaaaatgccAGCGGAGGAGGTGGAGGCGGCGGGAGCTCCTCACCTCGGGGGCATGGAACAGCCAATGGCAGCGTCCCGTCTTCCTCCGGGCCCTCATCGTCTGCCTCTTCGTCCAGTAAAGGGGACAGGAAACAGAAGTACGGAGGAGGGAAGAACTCCGCGTCGCACAGAGACCCTGTGGAAAACTGCATTCCCAACAATCAGCTGAGCAAACCCGAGGCGCTCGTCAGgctggAGCAGGATGTTAAGAAGCTGAAGGCAGATCTGCAGGCCAGCAGACAGACCGAACAGGATCTGCGCAGTCAGCTGGGCTCTCTGGGCACCTCCGAACGCAGCATACGCTCCGAACTCGGCCAGCTGCGGCAGGAAAACGAACTACTGCAAAACAAACTTCATAACGCCGTTCAGGCAAAGCAGAAAGATAAGCAGACGCTGGGGCAGCTGGAGAAGCGTCTGAAGGCAGAACAGGAGGCTCGAGCCGCAGCAGAGAAACTGTTAGCAGAGGAGAAGAAACGCAAGAAGCTGGAGGAGGCCACGGCGGCCCGCGCTGTCGCTCTCGCTGCTGCAACCAGaggtGAGTGCACAGAGTCTTTGAGGAGGAGGATTTCTGAGCTGGAGGCCGAATGTAAGAAACTCACGCTTGACATCAAGGTGAAGGAAGATCAAATCAGAGAGCTGGAGCTCAAAGTTCAAGAGCTGCATAAATATAAGGAAAACGAGAAGGACACAGAGGTTCTGATGTCAGCACTGTCAGCAATGCAGGATAAAACCCAGCATCTGGAAAACAGCCTCAGCGCTGAGACCCGAATCAAGCTGGACCTCTTCTCTGCCCTCGGAGATGCTAAAAGACAGCTGGAGATCGCACAAGGTCAGATTCTGCAGAAAGACCAGGAGATTAAAGACCTGAAGCAAAAGATAGCAGAGGTGATGGCCGTCATGCCCAGTGTGGTGTATTCAGCAGATACAGGCAGCATGACCCCCGTCACGCCACATTACTCCTCCAAGTTCATGGACACCAGTCCATCAGGACTGGACCCAAACGCTTCGGTTTACCAGCCATTGAAGAAATGAATGCTTGTCTCTCACcaaaacagacacgcacacatacacacacacaaacacaaacacacacacagtatctggttgtttttttttattttagttttttctccATAGGCCCAGATTCAGAATCATCTTTGGCATGTCTGTGGCTCAGATCGCTTTTTTGTTTTCGTCTTCTATTACTACAGCTTCTTGCCTGGTCAGAAGGATGTCGTATTGTGTGACTGTATTTGTTGtagtaaaaaaacaaagacaaaaaagaa
>TCONS_00012226
aaaacacaacaaccaCAGCGGTATATTCCTCAGCGGGACTGCCAATGTTTCCCGTCCAAATGAGACAGCACCCTGGACCATACTGCAGTACGTATTAAAAAGCCCGATTTAAGGGGGCGAGGATGAAGCGGCGCAATGCGGACTGCAGCAAGCTCCGACGGCCCTTAAAACGGAACCGAATCACCGAGGGGATCTACGGCAGGTACGACTTTGTGTTGGAGTTTCGCTTCGAGTACCTCTGGCCTTTCTGGCTCTTTATTCGCAGTGTTTACGATTCCTTCAGATACCAGGGCCTGgCTTTCtcagtgttttttgtgtgtgtggcatTCACATCAGATATTATATGTCTGCTGTTCATCCCAGTACAGTGGCTGTTCTTTGCAGCCAGCACATACGTGTGGGTACAGTACGTCTGGCACACAGAACGAGGGGTCTGCCTCCCCACTGTGTCGCTATGGATACTTTTTGTTTATATCGAGGCAGCTATCAGATTTAAAGATTTGAAACACTTCCACGTGGACTTGTGTCGTCCTTTTGCAGCACACTGTATTGGGTACCCGGTGGTGACGCTGGGCTTTGGTTTTAAGAGTTATGTAAGTTATAAGATGCGTCTTCGAAAACAGAAGGAAGTGCAGAAAGAGAACGAATTTTACATGCAGCTGCTTCAGCAGGCCTTACCTCCAGAACAACAGCTCATACAGAGACAAGAGAGAGAAGCAGAGGAGGGTTGTAGTTTTTGGTGTCTGTGTTTTTTCAAGCTATGATGGAGGAAGCGGTTTTTCTGCGACGTCCAAGTGGTTTAAGTGAAAGAAGGGGGAGGTGGGACAAAAGgcagttgttttgttttctttgcccgCTGTCACTTCTCGCTTTCTGTCTGTTTTCCAGCCAGACCTCGGCTGCACTCTCTCTGTGAGGTCTCTGTGAGGTTTCAAGTAATAAAACGTTTTTTTCTGGC

Function

symbol description
maco1b Predicted to enable actin filament binding activity and microtubule binding activity. Predicted to be involved in chemotaxis and neuronal signal transduction. Predicted to be located in several cellular components, including axon; endoplasmic reticulum; and nucleus. Predicted to be integral component of membrane. Predicted to be active in nuclear membrane and rough endoplasmic reticulum membrane. Orthologous to human MACO1 (macoilin 1).

GO:

id name namespace
GO:0006935 chemotaxis biological_process
GO:0023041 neuronal signal transduction biological_process
GO:0042995 cell projection cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0030424 axon cellular_component
GO:0005634 nucleus cellular_component
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0051015 actin filament binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1188 Predicted to enable actin filament binding activity and microtubule binding activity. Predicted to be involved in chemotaxis and neuronal signal transduction. Predicted to be located in several cellular components, including axon; endoplasmic reticulum; and nucleus. Predicted to be integral component of membrane. Predicted to be active in nuclear membrane and rough endoplasmic reticulum membrane. Orthologous to human MACO1 (macoilin 1).

Ensembl:

ensembl_id ENSDARG00000012741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012225 False 2480 mRNA 0.50 11 45524475 45570507
TCONS_00012226 True 958 mRNA 0.48 6 45524479 45572062

Neighbor

gene id symbol gene type direction distance location
XLOC_006230 tmem50a coding upstream 28913 45485185 ~ 45495562 (+)
XLOC_006229 mgst3b coding upstream 42472 45476181 ~ 45482003 (+)
XLOC_006228 NA coding upstream 51792 45455745 ~ 45472683 (+)
XLOC_006227 syf2 coding upstream 81467 45431660 ~ 45443008 (+)
XLOC_006226 znfl1g coding upstream 187770 45332203 ~ 45336705 (+)
XLOC_006232 ldlrap1b coding downstream 10329 45582391 ~ 45645167 (+)
XLOC_006233 si:ch211-62a1.3 coding downstream 137318 45709380 ~ 45774815 (+)
XLOC_006234 BX914200.1 coding downstream 268365 45840427 ~ 45843939 (+)
XLOC_006235 NA coding downstream 299363 45871425 ~ 45876970 (+)
XLOC_006236 NA coding downstream 359095 45931157 ~ 45931536 (+)
XLOC_006225 NA non-coding upstream 232721 45271632 ~ 45291754 (+)
XLOC_006224 NA non-coding upstream 508876 45009947 ~ 45015599 (+)
XLOC_006223 CR786566.1 non-coding upstream 658765 44865594 ~ 44865710 (+)
XLOC_006221 NA non-coding upstream 688012 44822196 ~ 44836463 (+)
XLOC_006237 BX936305.2 non-coding downstream 370096 45942158 ~ 45958468 (+)
XLOC_006241 CABZ01022272.1 non-coding downstream 655651 46227713 ~ 46227829 (+)

Expression


Co-expression Network