XLOC_006291 (CU929144.1)


Basic Information

Item Value
gene id XLOC_006291
gene name CU929144.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 51297553 ~ 51375708 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012286
TAGAGTTCTTAGCCACACCCCTTTAGTGGTCATGTGATGATGAGGTCACAGGACTCCAACATGGACGACACTGGAGCCTCTCAGGTGTGCAGACGTGTGTTTTCTCAACCCATTCCTCAGATGCTGCGTATTTGAGGAAAGCGTATGATCTGCTTCGAGCGTCTGATGCCAGATCTCAGTCTGAGCTCAGTGTTTTGTGTGCTGAACAGTGTCTACAGCTGGGCTGCTGGGAAATGGCTGAGGACTGTTTAATGATGTTCTGGGAAAGGAAAGCTCCAGTGAATCAGTTCCTGTGTCGTGCACATCTCTGCCAGGGTCAGCTCATCTCCTCACGCTCCATTAACACAGCGGAGGACTTGGAGAAGGCTGTGATGTGCTTCCTGAAGGCCATAGAGATTGCCAAAGACAAGTGCAGATACCATTTCCTAGTCTTCAACGCTTCTCTGCTGTACTTCCAAGCGGTCCGGCGGTTCCTGAGGCCCGGTCAGCGGCATCTCCTGGTGAATTCACTCTCGCAGGTTCTCAAGGCTCTGGAGGAGGTTCAGGATCCGGATCACGCATGGAGagctgagctgatgctACATCTGGTTGAATGTTTGCTGGATGCTGGGAAGAGGACAGAAGCTGCTGACATGGCGAAGGTCACCTACCAGTTTATAGATGCACATAACCCAGAGCTGCGTCCCAGGATCGTCTCCATACTGGTTCGACACAACCTCATGGATGTCTCTAAGATGTTGAAGGATGAAAACCCACAACTGCTCGTGATCCACAAGATCCAAAAGCTCAAACATATGGTTGATGTCAGTGAGATAAAGAGAGAGGATGGAGAGAACGCTCTGATGGAGATCCTCCAGCTCCTCATCCAGACACCAAAACACAGAGCATCCGTCAGCCACAGCTCCAGTGCTTCATCCGTCAGCCGCAGATCTGCTGCTTCACCCAACATCAGCCCAAGAGGATCTGCCACTCCACCTGTCAGCCCCAAAGAATCCACTACTCCACCATTAACCCCCAAAATATCCACTACTCCGCCCGAAGCTCCTAAAGGATCAACTACTCCTCCCATCAGCACCAGAGGATCCACTACTCTACCCATTGTGACCCCTAAAGTATCAACCACTCCACCCTTAACCCCTAAAGGATCCACTACTCCACATTTAACCCCTAAAGGATCCACTACTCCACCCATAACCCTTAAAAGATCCACTACTCCACCCATAACCCCTAAAGAATCTCCTACTCCACCTGTTTTGAGCCCCAGAGGATCCGCTACTTCAATCGTCAGCTCCAGAGCATCCATCAGCTCCAGTCTGGACCACAGCTCCTCCATCCCACTGAGTGACAGGGTTGATCTGCTGTTGGAGCTGGCGTTTCTCTCTCTGCAGCTCCAGCATCCCCAGACAGCCGTCCTCTGCCTGAAGGAGCTCAGAGAGACACAGGGACTCACGGTGGGTCAGCGTGTTCTTCTGGAGTGTGTGCAGTGTGAGCTCGACcttcacacacacccacaccggATAGAGAAATACTCCAGATCTGCTGTGGAGttccAGCTAAGTGTGTTGCTGCGTCTGGAGGCGCTGCTGCAGAAGGCCATGAAGGAAGCAGACGCTGCGGTGGTtcaggcagtgtgtgtgtgtgtgtggaacacGTGTCTGCCGCTGCTACAACACAACCTGAGGAGGAGAGTCAAGAAACCACTGATCACACTCACTCGCGCACTGGAGGACACACACAGTGTGCTGCTGGATGTCCTGTGCTGTGCTCATGCTGAACTGGCGTCTGTCTCCGAGGACGAGGAGAGTCTGGAGTCTGCAGTAACTCACCTGgagagatcagtgtgtgtgtgtccccaGAGCGAGCGTCTGTCCTCCCGCCTGCACCACCTCTGTCTGCGTGCCTCCATGCACAAACACACCACTCCTGCTGGAGCCCTGgatcacgcacacacactcatactgcaGGTGCCAATGCAAAAACACACTCACTCTCTGTCTGTAACGAGATGTGTTTGGGGATGTTTACGCCTGGGCTCAGAGTTTATAAATATGCGTTAGTGTtttcacgatactggaattcagtaccagtcgatactaaaattttaaaacgctttcctgctaacatttgagcgctgttgagcatgtTCTTAGGGTGCACTCACTATGCTGTTCGAACCTTGCCCAGACGCGTTACCCAGTTTGTTTGACAAGTATCATCGGCCTCAGGTGTGgttctcttgcaagccatctctcctgcagtcataccaacactgactctcataatcaacacatctcttgactctggtttattccccactacatttaagctggca
>TCONS_00012287
ATGGATCTGCGTATTCGACAATATTTATCAAAAGCGGAGGAGAAAAGAGATGCTGCGTATTTGAGGAAAGCGTATGATCTGCTTCGAGCGTCTGATGCCAGATCTCAGTCTGAGCTCAGTGTTTTGTGTGCTGAACAGTGTCTACAGCTGGGCTGCTGGGAAATGGCTGAGGACTGTTTAATGATGTTCTGGGAAAGGAAAGCTCCAGTGAATCAGTTCCTGTGTCGTGCACATCTCTGCCAGGGTCAGCTCATCTCCTCACGCTCCATTAACACAGCGGAGGACTTGGAGAAGGCTGTGATGTGCTTCCTGAAGGCCATAGAGATTGCCAAAGACAAGTGCAGATACCATTTCCTAGTCTTCAACGCTTCTCTGCTGTACTTCCAAGCGGTCCGGCGGTTCCTGAGGCCCGGTCAGCGGCATCTCCTGGTGAATTCACTCTCGCAGGTTCTCAAGGCTCTGGAGGAGGTTCAGGATCCGGATCACGCATGGAGagctgagctgatgctACATCTGGTTGAATGTTTGCTGGATGCTGGGAAGAGGACAGAAGCTGCTGACATGGCGAAGGTCACCTACCAGTTTATAGATGCACATAACCCAGAGCTGCGTCCCAGGATCGTCTCCATACTGGTTCGACACAACCTCATGGATGTCTCTAAGATGTTGAAGGATGAAAACCCACAACTGCTCGTGATCCACAAGATCCAAAAGCTCAAACATATGGTTGATGTCAGTGAGATAAAGAGAGAGGATGGAGAGAACGCTCTGATGGAGATCCTCCAGCTCCTCATCCAGACACCAAAACACAGAGCATCCGTCAGCCACAGCTCCAGTGCTTCATCCGTCAGCCGCAGATCTGCTGCTTCACCCAACATCAGCCCAAGAGGATCTGCCACTCCACCTGTCAGCCCCAAAGAATCCACTACTCCACCATTAACCCCCAAAATATCCACTACTCCGCCCGAAGCTCCTAAAGGATCAACTACTCCTCCCATCAGCACCAGAGGATCCACTACTCTACCCATTGTGACCCCTAAAGTATCAACCACTCCACCCTTAACCCCTAAAGGATCCACTACTCCACATTTAACCCCTAAAGGATCCACTACTCCACCCATAACCCTTAAAAGATCCACTACTCCACCCATAACCCCTAAAGAATCTCCTACTCCACCTGTTTTGAGCCCCAGAGGATCCGCTACTTCAATCGTCAGCTCCAGAGCATCCATCAGCTCCAGTCTGGACCACAGCTCCTCCATCCCACTGAGTGACAGGGTTGATCTGCTGTTGGAGCTGGCGTTTCTCTCTCTGCAGCTCCAGCATCCCCAGACAGCCGTCCTCTGCCTGAAGGAGCTCAGAGAGACACAGGGACTCACGGTGGGTCAGCGTGTTCTTCTGGAGTGTGTGCAGTGTGAGCTCGACcttcacacacacccacaccggATAGAGAAATACTCCAGATCTGCTGTGGAGttccAGCTAAGTGTGTTGCTGCGTCTGGAGGCGCTGCTGCAGAAGGCCATGAAGGAAGCAGACGCTGCGGTGGTtcaggcagtgtgtgtgtgtgtgtggaacacGTGTCTGCCGCTGCTACAACACAACCTGAGGAGGAGAGTCAAGAAACCACTGATCACACTCACTCGCGCACTGGAGGACACACACAGTGTGCTGCTGGATGTCCTGTGCTGTGCTCATGCTGAACTGGCGTCTGTCTCCGAGGACGAGGAGAGTCTGGAGTCTGCAGTAACTCACCTGgagagatcagtgtgtgtgtgtccccaGAGCGAGCGTCTGTCCTCCCGCCTGCACCACCTCTGTCTGCGTGCCTCCATGCACAAACACACCACTCCTGCTGGAGCCCTGgatcacgcacacacactcatactgcaGGTGCCAATGCAAAAACACACTCACTCTCTGTCTGTAACGAGATGTGTTTGGGGATGTTTACGCCTGGGCTCAGAGTTTATAAATATGCGTTAGTGTtttcacgatactggaattcagtaccagtcgatactaaaattttaaaacgctttcctgctaacatttgagcgctgttgagcatgtTCTTAGGGTGCACTCACTATGCTGTTCGAACCTTGCCCAGACGCGTTACCCAGTTTGTTTGACAAGTATCATCGGCCTCAGGTGTGgttctcttgcaagccatctctcctgcagtcataccaacactgactctcataatcaacacatctcttgactctggtttattccccactacatttaagctggca

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0046907 intracellular transport biological_process
GO:0045184 establishment of protein localization biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0071705 nitrogen compound transport biological_process
GO:0042886 amide transport biological_process
GO:0033036 macromolecule localization biological_process
GO:0034613 cellular protein localization biological_process
GO:0051641 cellular localization biological_process
GO:0051645 Golgi localization biological_process
GO:0051649 establishment of localization in cell biological_process
GO:0070727 cellular macromolecule localization biological_process
GO:0008104 protein localization biological_process
GO:0030135 coated vesicle cellular_component
GO:0005798 Golgi-associated vesicle cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005829 cytosol cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012286 False 2332 lncRNA 0.52 12 51297553 51375708
TCONS_00012287 True 2261 lncRNA 0.52 12 51311936 51375708

Neighbor

gene id symbol gene type direction distance location
XLOC_006290 CABZ01078666.1 coding upstream 194694 51102744 ~ 51102859 (+)
XLOC_006287 dntt coding upstream 275682 50778187 ~ 51021871 (+)
XLOC_006289 CABZ01083953.1 coding upstream 296375 51001059 ~ 51001178 (+)
XLOC_006288 CABZ01077016.1 coding upstream 503681 50793756 ~ 50793872 (+)
XLOC_006286 dre-mir-202 coding upstream 694839 50602639 ~ 50602714 (+)
XLOC_006294 CABZ01094390.1 coding downstream 52690 51428398 ~ 51431317 (+)
XLOC_006295 NA coding downstream 58126 51433834 ~ 51439893 (+)
XLOC_006296 NA coding downstream 69286 51444994 ~ 51462667 (+)
XLOC_006297 nkx6.2 coding downstream 204143 51579851 ~ 51584264 (+)
XLOC_006298 NA coding downstream 242075 51617783 ~ 51625567 (+)
XLOC_006285 NA non-coding upstream 775953 50520625 ~ 50521600 (+)
XLOC_006300 NA non-coding downstream 365846 51741554 ~ 51795401 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_02541296_02567509 CFAP46 coding CI01180000 null 2541296 ~ 2567783 (+)