XLOC_006308


Basic Information

Item Value
gene id XLOC_006308
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 52169949 ~ 52174571 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013705
AGAGACGCCGGCTTCAGCACTGATCGACAGTCAGCTCTGTGCGGGATGCAGCACTGCACCGGTTTTTACCCAACTGAGGCTGCTGAAACCGGAAGCTctggaaaaagaaagagaaatagagaaacggagagagggagggagagagagaggtagAAGAAGGGAGCGGGGCGTCTGAGCCCGGGAGAGagtgaccgaccgaccgacccgCCGCTGTTCCTTCAGTCGCTTCTTTGATCCGCGAACAAACACCGGACACACACCGACACACCTGCCGCTCACCGCCGACACACACACCGCGGTGGAGCAGGAGGATATCAGACACATTTACACGCTCTTACTGGGCGGATAGCGGCACCTGAGCGTCCCCGGAAAACATGGACGGATCACCGCGGTGCGACACCGAGAGGAGCGCCGGTCCCCGCGGAAGGAGACGGAGATCCAGCGCGCTGCTGGCCGCCCTGACCCTCTGCTCCAGAGGGAAAGTTTCATGTGTTGTGTTCAGGTGTggtgttcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcatgatcAGCTCTTGGTTTCCCACAGAGATGGACTCATTGTTCACATGAGATGGTGTTGGTGTTGGTGTGGGAGTGAGCGGGTTATAGACTGATGGTGTCTCTGTGGAATCAGCGTGTTTATATAGAGATTATCATGTTTAATGTATACCCATACTCTTCTCTATACTATACACTATATTTCCACACACTGTCTGGATCATATTAAGAGCACGTGTATATGAGAGAAAGAGTGTAGTTCTGTAgtaagagtgtgtttgtgtgttagagCGTATGGTTGTGTATTATGAGCCTGTTTATATAGACTGAGTGTTTTAGAAAGAGCCTGTTGATATAGAATAAGCTTATTTATATCTATAGTGCA
>TCONS_00013706
AGAGACGCCGGCTTCAGCACTGATCGACAGTCAGCTCTGTGCGGGATGCAGCACTGCACCGGTTTTTACCCAACTGAGGCTGCTGAAACCGGAAGCTctggaaaaagaaagagaaatagagaaacggagagagggagggagagagagaggtagAAGAAGGGAGCGGGGCGTCTGAGCCCGGGAGAGagtgaccgaccgaccgacccgCCGCTGTTCCTTCAGTCGCTTCTTTGATCCGCGAACAAACACCGGACACACACCGACACACCTGCCGCTCACCGCCGACACACACACCGCGGTGGAGCAGGAGGATATCAGACACATTTACACGCTCTTACTGGGCGGATAGCGGCACCTGAGCGTCCCCGGAAAACATGGACGGATCACCGCGGTGCGACACCGAGAGGAGCGCCGGTCCCCGCGGAAGGAGACGGAGATCCAGCGCGCTGCTGGCCGCCCTGACCCTCTGCTCCAGAGTCAGATGGTGTGGAGCGCTCATCTCTGCATGTTTACCACACCGTCAGTCTGTCTGCTGGTGGAGCGGGATATTTCTCCATGACAGAGAAAC
>TCONS_00013444
ATGATTAGCTGTATTCTTTATGATTCTTTTCCATGGTTTTGGACACTGGTATTCCCGGTTCCGCCAGCGGGATGCAGCACTGCACCGGTTTTTACCCAACTGAGGCTGCTGAAACCGGAAGCTctggaaaaagaaagagaaatagagaaacggagagagggagggagagagagaggtagAAGAAGGGAGCGGGGCGTCTGAGCCCGGGAGAGagtgaccgaccgaccgacccgCCGCTGTTCCTTCAGTCGCTTCTTTGATCCGCGAACAAACACCGGACACACACCGACACACCTGCCGCTCACCGCCGACACACACACCGCGGTGGAGCAGGAGGATATCAGACACATTTACACGCTCTTACTGGGCGGATAGCGGCACCTGAGCGTCCCCGGAAAACATGGACGGATCACCGCGGTGCGACACCGAGAGGAGCGCCGGTCCCCGCGGAAGGAGACGGAGATCCAGCGCGCTGCTGGCCGCCCTGACCCTCTGCTCCAGAGTCAGATGGTGTGGAGCGCTCATCTCTGCATGTTTACCACACCGTCAGTCTGTCTGCTGGTGGAGCGGGATATTTCTCCATGACAGAGAAACAGATGGAGCTGTGGAGGAAAAGCTGTCCGTTTCCCACAGCCGTGATGATCAATATGCAGAAATCACAGAGCGTCAGGAATCTTTTAGAAAACTGTGAAGTGGGAATCCTCCTCCATCAAGAGCTGagtttttatttaaagatgtgagctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaaacagCTCTTGATTGGCAGAAAGCGTCCGCTGTGTCAGCAGTTGTGGGCTTGTGGGATTAACATGTTTGACAAGCAGGAATTGGATTATCATGATCCGCCGTCAGCTCTCTGACAGACGATGTGCTGAATGACTTTTCCATCATATTTCAGTGGGAAACGGGAAGCGTTCATTCACACAGAAAGGAAAATCAGCCGCTGATTCACTCTCTCAAAGCATTCAGTGAGCGTTATTTACACAAATCTCCTACACTAAACCCTTTCTCCTCTCACTTCCCAACAGTTCAAAATAAGCCTGTCATAATGACACTTGTACATCATCATCTACTCTGAATTGTAAAATACTttcatatgtacagtatatataaaacatCATCATTTCTATTGCTTATTTTACACTAAATGTCCTTCTGTCATCTTTTGttgatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgcgcgtgtgtgtgcgcgtgtgtgtgcgcgtgtgcatgtgtgcgcgtgtgtgtgtgtgtgtgtgcacgcatgtaCAATGAGCTTCTGAAATCtactaaatgaac
>TCONS_00013707
CGGAAGCTctggaaaaagaaagagaaatagagaaacggagagagggagggagagagagaggtagAAGAAGGGAGCGGGGCGTCTGAGCCCGGGAGAGagtgaccgaccgaccgacccgCCGCTGTTCCTTCAGTCGCTTCTTTGATCCGCGAACAAACACCGGACACACACCGACACACCTGCCGCTCACCGCCGACACACACACCGCGGTGGAGCAGGAGGATATCAGACACATTTACACGCTCTTACTGGGCGGATAGCGGCACCTGAGCGTCCCCGGAAAACATGGACGGATCACCGCGGTGCGACACCGAGAGGAGCGCCGGTCCCCGCGGAAGGAGACGGAGATCCAGCGCGCTGCTGGCCGCCCTGACCCTCTGCTCCAGAGCTCTTGATTGGCAGAAAGCGTCCGCTGTGTCAGCAGTTGTGGGCTTGTGGGATTAACATGTTTGACAAGCAGGAATTGGATTATCATGATCCGCCGTCAGCTCTCTGACAGACGATGTGCTGAATGACTTTTCCATCATATTTCAGTGGGAAACGGGAAGCGTTCATTCACACAGAAAGGAAAATCAGCCGCTGATTCACTCTCTCAAAGCATTCAGTGAGCGTTATTTACACAAATCTCCTACACTAAACCCTTTCTCCTCTCACTTCCCAACAGTTCAAAATAAGCCTGTCATAATGACACTTGTACATCATCATCTACTCTGAATTGTAAAATACTttcatatgtacagtatatataaaacatCATCATTTCTATTGCTTATTTTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013705 False 927 lncRNA 0.51 3 52169949 52173258
TCONS_00013706 False 568 lncRNA 0.60 3 52169949 52173802
TCONS_00013444 False 1363 lncRNA 0.50 2 52172141 52174571
TCONS_00013707 True 778 lncRNA 0.51 2 52172256 52174389

Neighbor

gene id symbol gene type direction distance location
XLOC_006307 NA coding upstream 33574 52120837 ~ 52136375 (+)
XLOC_006306 CABZ01092745.1 coding upstream 64934 52071971 ~ 52105015 (+)
XLOC_006305 CABZ01089777.1 coding upstream 99979 52061034 ~ 52069970 (+)
XLOC_006304 npas4l coding upstream 152936 52006253 ~ 52017013 (+)
XLOC_006303 klhdc3 coding upstream 181733 51981764 ~ 51988216 (+)
XLOC_006300 NA non-coding upstream 374548 51741554 ~ 51795401 (+)
XLOC_006298 NA non-coding upstream 544382 51617783 ~ 51625567 (+)
XLOC_006296 NA non-coding upstream 707282 51444994 ~ 51462667 (+)
XLOC_006295 NA non-coding upstream 730056 51433834 ~ 51439893 (+)

Expression


Co-expression Network