XLOC_006564 (si:ch211-270n8.1)


Basic Information

Item Value
gene id XLOC_006564
gene name si:ch211-270n8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 20379392 ~ 20381485 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012697
aTCAGATACTTCTCTGCTGCTCGGCTCAATCCAAAAGGAACATGAGGAGGCTTGCGTCATATGTTATCTTCATTGTCTGTTGTGGTCTGGCATTGTCTCAACAACCAGAACGGAAATGCTTGAGGGAGAAGGTCATCGTGTTCCCAGAACTGAGCACCAACACCTGGGTGAAGCTCCATCCCAATGAATCCATGACTCAGACTGAATTCACTGTGTGTATGAGATTCTACACTGATCAAGAGAGCTCCAACCCATGTCTATTTTCACTGGCCACACCATCTAATCCTCAAGACATTTCCTTATCATGGTCTGCTGAAACCAAAAAATACCAGTTGTTAATTCATAACTCTCCGGTCCAATTCAAAGGCTTGCCATTCAATCTGAATCAGTGGAACACAATTTGTGTGACATGGGATGTCAAAAATGCTCTTGCACAGATGTTTGTGAATGAAGTAGCCAGCATTAAGAAGGTTGTTGGTCCTAAGCAAGCTTTTAAAGGAGCTCCTGTTATATCACTCGGCCAGTGTCAGACCCAAATTGGTGGATCCTTTCCCCAGTCCAAAACCTTCACAGGTTTCATATCAGATGTGCATATGCACAATCAAGTCCTAACCACCAATCAGATTAAGACCTACATGGAGGCAAAGAGCAAATACAAACTTGGTGATTATATCAGCTGGCACAATCTGATGTACACCATTTTTGGGTCCGCAGAAATCAATGAAAAGCATCACGTAACCTTCAAAGTCAAAGAAGAGCAGACATAGCACACCTTTGTACTGCATAATATTGTAACATGCAAAATGAATAAACATCAATGAATAAACGGTGTACTGGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000045089

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012697 True 838 mRNA 0.42 2 20379392 20381485

Neighbor

gene id symbol gene type direction distance location
XLOC_006563 AL954359.1 coding downstream 147642 20227045 ~ 20231750 (-)
XLOC_006562 AL954359.2 coding downstream 157258 20217490 ~ 20222134 (-)
XLOC_006561 fam204a coding downstream 579568 19766896 ~ 19799824 (-)
XLOC_006560 rab11fip2 coding downstream 737104 19610562 ~ 19642288 (-)
XLOC_006559 NA coding downstream 1022381 19350851 ~ 19357011 (-)
XLOC_006565 gfra1a coding upstream 11171 20392656 ~ 20519001 (-)
XLOC_006566 si:ch1073-126c3.2 coding upstream 153674 20535159 ~ 20540790 (-)
XLOC_006567 CU633804.1 coding upstream 165482 20546967 ~ 20547498 (-)
XLOC_006568 NA coding upstream 348349 20729834 ~ 20731888 (-)
XLOC_006569 NA coding upstream 695167 21076652 ~ 21079411 (-)
XLOC_006471 BX537274.2 misc downstream 10114487 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 19553167 825904 ~ 826225 (-)
XLOC_006558 NA non-coding downstream 1039956 19338477 ~ 19339436 (-)
XLOC_006557 NA non-coding downstream 1102060 19276173 ~ 19277332 (-)
XLOC_006570 NA non-coding upstream 764629 21146114 ~ 21147382 (-)
XLOC_006577 NA non-coding upstream 1544216 21925701 ~ 21939965 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G685072 NA non-coding CI01180000 null 10324010 ~ 10442733 (+)