mgarpb (LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972)


Basic Information

Item Value
gene id mgarpb
gene name LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8492144 ~ 8500212 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU2794
GTGGCAGATGACCATGTCAAGTCCGAGGCAGACATCCCCGCTAGAAGCCTCGCTTCGTCAGAAGAGGCCCTCGTTACAGATGTGGAGAACATTTTGGAATCGCAAGAAGACTCGACAGAAGAAGACTCTGTCTCTGGAGCTGCAGGGGTGACATCAGAAACAGTGGAGGAAGCGGGTCAGGAAGTGGAAGAATGTAAAGGTTTGTGTCATGAGTCAACGGAAACGGAGCATGTAGATCTCACAGCACCAACAGCAGATCCGGAGGAATTATTACAGGCTACGGGTGCAACAGAAGCTGCAGAAGAAGTAATTGTCACGGAAATGACGCAGGATGCTGTGGAGAATGCTAAACCTGTTGAGGCATCAGATGAAGCTGTTGAAAGTGGAAATGTTGCAATGAGAATGACACAAGCCTGAAGTGAATGTACCACACCTGAGATACCGAGACACTGAAAACCAGTCAAATGAACACAATCTGTGATGTTATACATACACTAAAGTTAGC
>TU2796
GAATTTGTTAGTTGGAAGTTTTCAGTAAATCCACAACAGGGAAAATGATGTTCTGCAGAGCGGCTTGGCAAAGACTTGCGCCTCTGGCGCGCAAAACACTCACTCCTTTCAGCAATGcgTTATTCCCTGCGCGACAGATGTCCTTTGGTCTGCCAGCATCCGGCACAAACATAGCTTATGTGTTACTTGGTGGAAGCTCGCTTACTGCTGCtcttgtttatGcctataaaacaataaattctgACAGTGCAAGATATAATGAAAGAATTGCCCAACTCGAGGCCAGACCtaaaagtaagtttttttttaattataacatttaaccatttattttagttttatagtatagttttgtttttgtctaccTGTTTTTA
>XM_043252378.1
GATCAGTCCGCGAGAGAGACACGCTTTTGCCGACTGAATTTGTTAGTTGGAAGTTTTCAGTAAATCCACAACAGGGAAAATGATGTTCTGCAGAGCGGCTTGGCAAAGACTTGCGCCTCTGGCGCGCAAAACACTCACTCCTTTCAGCAATGcgTTATTCCCTGCGCGACAGATGTCCTTTGGTCTGCCAGCATCCGGCACAAACATAGCTTATGTGTTACTTGGTGGAAGCTCGCTTACTGCTGCtcttgtttatGcctataaaacaataaattctgACAGTGCAAGATATAATGAAAGAATTGCCCAACTCGAGGCCAGACCtaaaaGTGAGGAGGGAGCAGTGGCCGAGATATCCTTGGTAGCAGAAGCAGCTGCGCTTGTGGAAACCACAGCAGCCGAGGAGATTAATGCAGAGGCTGAACAGACCCCAGAACCCGTGGAGGCAGCGACCGCAATTGTAGAAGCAGTAGCGGCTGATGCTGAGGAACCTAGTGCTCCTGTTGTTGAGGATGTCGCTGTGGCAGCTGATCTTATTGCTGAAACAACCGttatcCCAATGTCTGACCTACCGAGCACTGTGAAAATCCTGGCTGGATCTACAGCAGAGATTGCAGCTGCTTCAGTCGGTGACCAGCACCTGGTGTCTGCGGTGAGACTGGCTGAGGAAAACAATTCTATGGAGACCCTCAACGGGCTGGAAGCTGCTGATATTAAAGCAGAGCACCCAGCAGAAGTGCCCGAGGAAGCTGTGATTGAGGAGCTCGTGATAGATAGACCGAATctgaaaacagaagaaaaagaacagGAGGAAGCGCCAGATTCAATTCATTTAGCAGAAGAGACTGTTGTTGTGGCAGATGACCATGTCAAGTCCGAGGCAGACATCCCCGCTAGAAGCCTCGCTTCGTCAGAAGAGGCCCTCGTTACAGATGTGGAGAACATTTTGGAATCGCAAGAAGACTCGACAGAAGAAGACTCTGTCTCTGGAGCTGCAGGGGTGACATCAGAAACAGTGGAGGAAGCGGGTCAGGAAGTGGAAGAATGTAAAGGTTTGTGTCATGAGTCAACGGAAACGGAGCATGTAGATCTCACAGCACCAACAGCAGATCCGGAGGAATTATTACAGGCTACGGGTGCAACAGAAGCTGCAGAAGAAGTAATTGTCACGGAAATGACGCAGGATGCTGTGGAGAATGCTAAACCTGTTGAGGCATCAGATGAAGCTGTTGAAAGTGGAAATGTTGCAATGAGAATGACACAAGCCTGAAGTGAATGTACCACACCTGAGATACCGAGACACTGAAAACCAGTCAAATGAACACAATCTGTGATGTTATACATACACTAAAGTTAGCATATAGTGCTGCGGTTACTGTCATAAAAAAGACTAACTGAATCGCAAATTAATGAATGACTATTGTCTCCTTAATGTTCTTATTTTACCTGAAAATAGATACTTAGTtcctttgaaacatttttatgtttatttgatcTAATTTTGTGTCTCTGGATAACCAGAGTGATCTGTGACACTGTATTACgctgaaataatgttttgtggGCACATTCATGTTGTTAGATTGTTTTAACatgagtagaaaaaaaaattgaata
>XM_043252454.1
GATCAGTCCGCGAGAGAGACACGCTTTTGCCGACTGAATTTGTTAGTTGGAAGTTTTCAGTAAATCCACAACAGGGAAAATGATGTTCTGCAGAGCGGCTTGGCAAAGACTTGCGCCTCTGGCGCGCAAAACACTCACTCCTTTCAGCAATGcgTTATTCCCTGCGCGACAGATGTCCTTTGGTCTGCCAGCATCCGGCACAAACATAGCTTATGTGTTACTTGGTGGAAGCTCGCTTACTGCTGCtcttgtttatGcctataaaacaataaattctgACAGTGCAAGATATAATGAAAGAATTGCCCAACTCGAGGCCAGACCtaaaaGAGCAGTGGCCGAGATATCCTTGGTAGCAGAAGCAGCTGCGCTTGTGGAAACCACAGCAGCCGAGGAGATTAATGCAGAGGCTGAACAGACCCCAGAACCCGTGGAGGCAGCGACCGCAATTGTAGAAGCAGTAGCGGCTGATGCTGAGGAACCTAGTGCTCCTGTTGTTGAGGATGTCGCTGTGGCAGCTGATCTTATTGCTGAAACAACCGttatcCCAATGTCTGACCTACCGAGCACTGTGAAAATCCTGGCTGGATCTACAGCAGAGATTGCAGCTGCTTCAGTCGGTGACCAGCACCTGGTGTCTGCGGTGAGACTGGCTGAGGAAAACAATTCTATGGAGACCCTCAACGGGCTGGAAGCTGCTGATATTAAAGCAGAGCACCCAGCAGAAGTGCCCGAGGAAGCTGTGATTGAGGAGCTCGTGATAGATAGACCGAATctgaaaacagaagaaaaagaacagGAGGAAGCGCCAGATTCAATTCATTTAGCAGAAGAGACTGTTGTTGTGGCAGATGACCATGTCAAGTCCGAGGCAGACATCCCCGCTAGAAGCCTCGCTTCGTCAGAAGAGGCCCTCGTTACAGATGTGGAGAACATTTTGGAATCGCAAGAAGACTCGACAGAAGAAGACTCTGTCTCTGGAGCTGCAGGGGTGACATCAGAAACAGTGGAGGAAGCGGGTCAGGAAGTGGAAGAATGTAAAGGTTTGTGTCATGAGTCAACGGAAACGGAGCATGTAGATCTCACAGCACCAACAGCAGATCCGGAGGAATTATTACAGGCTACGGGTGCAACAGAAGCTGCAGAAGAAGTAATTGTCACGGAAATGACGCAGGATGCTGTGGAGAATGCTAAACCTGTTGAGGCATCAGATGAAGCTGTTGAAAGTGGAAATGTTGCAATGAGAATGACACAAGCCTGAAGTGAATGTACCACACCTGAGATACCGAGACACTGAAAACCAGTCAAATGAACACAATCTGTGATGTTATACATACACTAAAGTTAGCATATAGTGCTGCGGTTACTGTCATAAAAAAGACTAACTGAATCGCAAATTAATGAATGACTATTGTCTCCTTAATGTTCTTATTTTACCTGAAAATAGATACTTAGTtcctttgaaacatttttatgtttatttgatcTAATTTTGTGTCTCTGGATAACCAGAGTGATCTGTGACACTGTATTACgctgaaataatgttttgtggGCACATTCATGTTGTTAGATTGTTTTAACatgagtagaaaaaaaaattgaata

Function

NR:

description
protein MGARP

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2794 False 505 lncRNA 0.45 2 8492403 8493280
TU2796 False 374 lncRNA 0.52 3 8497602 8500177
XM_043252378.1 True 1617 mRNA 0.46 7 8492144 8500212
XM_043252454.1 False 1608 mRNA 0.46 6 8492144 8500212

Neighbor

gene id symbol gene type direction distance location
elf2b elf2b,LOC107692595,LOC107702304,LOC107742505,LOC107714223,LOC107562959 coding downstream 2089 8472819 ~ 8490055 (-)
pcdh18a LOC107751534,LOC107692598,LOC107564003,LOC107746447,LOC107557554 coding downstream 312568 8172337 ~ 8179576 (-)
sclt1 sclt1,LOC107692600,LOC107665924,LOC107683335 coding downstream 673745 7805692 ~ 7818399 (-)
cplx2l cplx2l,LOC107692605,LOC107723185,LOC107665962,LOC107758899,LOC108241424,LOC103366469,LOC107390991 coding downstream 721618 7762381 ~ 7770526 (-)
b4galt1 LOC107692709,LOC107565367,LOC107758898,LOC107665944,LOC107557953,LOC108277608 coding downstream 762404 7722102 ~ 7729740 (-)
camk2d2 camk2d2,LOC107714220,LOC107563926,LOC107742503,LOC107702309,LOC107562980,LOC103354871,LOC108246882 coding upstream 65941 8566153 ~ 8598509 (-)
pde5aa LOC107692592,LOC107563895 coding upstream 108876 8609088 ~ 8622357 (-)
wfs1a wfs1a,LOC107565338,LOC107692704,LOC107742510 coding upstream 134349 8634561 ~ 8642497 (-)
LOC122351261 NA coding upstream 173782 8673994 ~ 8676615 (-)
LOC122345778 dmd,LOC107692624 coding upstream 213418 8713630 ~ 8751572 (-)
LOC122351284 NA non-coding downstream 43520 8446548 ~ 8448624 (-)
G1868 NA non-coding downstream 324757 8138483 ~ 8167387 (-)
LOC122341751 NA non-coding downstream 414757 8075175 ~ 8077387 (-)
G1845 pcdh10a,LOC107751533,LOC107665923,LOC107557555 non-coding downstream 507841 7953213 ~ 7984303 (-)
G1809 LOC107723197,LOC107692608,LOC107564078 non-coding downstream 694698 7743495 ~ 7797446 (-)
G2010 NA non-coding upstream 131252 8631464 ~ 8634397 (-)
G2016 NA non-coding upstream 169201 8669413 ~ 8670804 (-)
G2033 NA non-coding upstream 195660 8695872 ~ 8697401 (-)
G2034 NA non-coding upstream 200217 8700429 ~ 9005360 (-)
G2038 NA non-coding upstream 208007 8708219 ~ 9014629 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other downstream 1196315 7204004 ~ 7295829 (-)
G1642 NA other downstream 1322122 7125642 ~ 7170022 (-)
trpc5a trpc5a,LOC107564287,LOC107692628,LOC107758875,LOC107590730,LOC108439362 other downstream 1357862 7071589 ~ 7134282 (-)
LOC122342514 NA other downstream 1947586 6533501 ~ 6544558 (-)
gaa2 si:ch73-12o23.1,LOC107725392,LOC107692649,LOC107722961,LOC107590719,LOC107565173,LOC107702495 other downstream 2023890 6456044 ~ 6468254 (-)
G1926 NA other upstream 55828 8556040 ~ 8607795 (-)
LOC122351550 LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 other upstream 279000 8779212 ~ 8798355 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other upstream 1856969 10357181 ~ 10401686 (-)
LOC122347930 dnah6,LOC106610484 other upstream 2234758 10734970 ~ 10799609 (-)
LOC122347618 kdm4c,LOC107655842,LOC107709452,LOC107702398,LOC107548355,LOC107750465,LOC107570226 other upstream 2306357 10806569 ~ 10814075 (-)

Expression


Co-expression Network