G3380 (LOC107572695,LOC107695836)


Basic Information

Item Value
gene id G3380
gene name LOC107572695,LOC107695836
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14723545 ~ 14791788 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4844
CCCCAGAGATATCAGGAGGAAGGAAGTTTGAGATGCCTTTGTTTCTAGGGCCATCATGCATGGGTAGTTTTTTCCCATGTAACTTTTGTGGAACAATGGTTGCTTACGTTTGATGTAGACTGATGAACAAATGGGTAAGGAACACTTACCTCTCCAGTGCCTTTAGATGGATTTTTGCTTAACTGACTGCAAGCTATTTGGGGAGGAGAATGCTGTAGAGGGCTCTATAAGCAAGGGACTGGAAACTGGTAGGGGTTTGAGCAGAAGTTTGTTTAGACTCTGTAGGGGCTTCCTTGGCCTCTGGAGTGGAGTTGTAGGTGAAAAGCGAGGAATTCAACTGGTAGGGCTGATGTTTCATGACATCCAGAACATTGAGATGCTTGGGTGGGGATTCTTCTTCTCCTTGTTTGCTTTAGACTTAATTTTTGGACTAGTTGCAGGAGGGGGTTGCTTAACCGCTGCAAAGGGGGATAAAGGGGATAAAATGGGATTATAGGAGACTGGAGGTGGGGCACGGACATTAGAAGAGTATTTCCAAGTGCTTGGCATCGAAAATGTTGGCGATGAGGTCTAGGTTTGTTGGCTCTCACAGTCTCATCGTCGACCACAAATTTTTCCATACGGGACTGTCTTCGAGCAAACAGTTTCAGCTCCTTTTCCTTTAGGTTCAGTCCTTCAGAAGCACCTGCATCTGATGAATACCCTTTAGGAGAAGATGATGGAGCCTTAGATCCTGAAAGCATGTGCTCAGGTGTTGGGGTGGGCAGGAAGCAACAGAGTTACGATCACTTGATCTAACCCCGTGATGTTTTAGACTGGGAAGGACCAGCCACGAAGTGAATCTGGTGTACGTTGTGTCTGAGTCCAGGATGGTTGAGGCAGATCTGGAACCCAAGCAGGTGGTGGCTCCTGTGGTATTGGCTGAGATGACAATGGAAACCAGGCTTTTTCAGGAGACTGCTTTGGTGGGTTTTGTTGGGGTACTGCCTGCACCAGGGTGTTCCCCATAGCTGGGGCAAGGGGACTCTGATTCATGGGACGACGCTCTGCAGACCAAGGAGGGTGAGCTAGGTTTATGGCAGGTTTGGGCAGGACAGGTGGAGGATTTTTCTGTTTGATCTTTGGAGCTTGCATAAAATTGCACGCTTCTGCACCCAGACTGAAAAAATCTTCTTCTGGAAATGACTCTGTTAAGGACTTCTGATCTCCTTTTTTCTGAAGCAGAGGCATCTCTTTGGAGTCTGACTTCACTCCTCTTCTTTTAGCTTCTGGCAAGATCCCTGTTTTAATTGCAGGTATAGCAATACGTTCATCACGTGACGCAATTATGTCTGATGTTGGGGACCAAACCTGTGGGGTTGTGTTTACTGGAACAGGAACCTTGAATATGTTTTCAGGTTTCTTAGATGTTGGGCTTGAGACACTGCTTACTGGTGAAAAAGTTTTTCGTCCTTGATTGTGACCACCCAGAAAGGGCTTAGCAGTTCTGTTGGAGACAAGGGATCTGGAAACAGTCGAACCTTGATATGAATCCAGACCATTCAAACCATTTGCTGATTGTGGTAGCATCTGTTGCTGAAATGGATGATCTTGATACTGTTGTTGTTGCCTTAGATAGATATCTTGTGGGGCTTGGGCTTCTTCCAGCGGAGGAGACTTTACAGTTTCACCTTCTGGCTCAAAAACTGCATCCACTGGTATGCCTTTTCGTCTCATTTCCTCTTGTTCTGCGGAAAGCTCATCCATCCTTTGACGCCTCTGGGCAAACATCAAGACCCCCTTTCCTTTCGTCTGTGGAAGATGCTCCATTGTTTCCAAGTTTGACTTAGTCTGTACTTTGAAATTCTGTTGTAGCTTAAATCAGTCACGtggtattaaaaaatgaatattcttcTCAGAATCAGTGGAAATCTGTTCAGACTTTGTAGTGTACAAAGTACAATCTCATTCTCTTCCTAAAATCTGTCTTTGAGAAGCCGTACCACAGCTAACCAGCATGAACCTTCTGACCCTTTTTGACACCCTTCTTTCTGGGAGCAGCAAAATGCAAagtgttatgtttacatttagagTTGGCTTTTTCCGCTGTCTCACTGACTGTGCCTCACTCCATCTTAGTCCTAT
>TU4847
tttttttttttttttttttTGAAACAGAGCTGatggaaacatttattaaacagaatAAACAGGAAGTGCAATAGTTTTGAAATGACAAGAGGAAACAACAGAAGTaacaattcataataataatatccgaattaacaaataaatgtgctAAAAGTATTCTGTACACCCATTTTTTGTTCACTGTATCTGAACAGCAGTGTCTGCTGAATgcataactattttaatttgaaaatatatatataaacacaaaagaattCTCAATTGCATTATTAGATTGACTTCAAATGTCCACAAAAAGTCTTAAAATACGTTGCTTCTAGGACCACTTGGCATAATGTGGTAAaattgttgtgttattaatatGGAAACATATCACAGTAAAActgaaactaataaaataaatccatcTAATTTATGAATGCTACAGTACAACTGGTATATATTGTTTGAAATTCTAATCTTGAGCCATTTAAAGGGTTATGAATTTAGAGTTGAttgtactataaaaataaaactttaactaacaaaacagcaaaaacagcacTTTTTGAATCTGCCCAGACATATTGTTTTGAATGTACTATTCAATTACTATTGCAAAATTACTGGTTTCCATTTCTTGCCTCCAGTGTTTGACATTTTGGCTGAAAACTTTGGTTTTGGAGCCACTGGTAATGCACATCGTGAAGCATTTTCATTATGCACGGGTAAAGAAGACCCTACACAGACATTGCCCCCAGAGATATCAGGAGGAAGGAAGTTTGAGATGCCTTTGTTTCTAGGGCCATCATGCATGGGTAGTTTTTTCCCATGTAACTTTTGTGGAACAATGGTTGCTTCGTTTGATGTAGACTGATGAACAAATGGGTAAGGAACACTTACCTCTCCAGTGCCTTTAGATGGATTTTGCTTAACTGACTGCAAGCTATTTGGGGAGGGGGAGAATGCTGTAGAGGGCTCATAAGCAAGGGACTGGAAACTGGTAGGGGTTTGAGCAGAAGTTTGTTTAGACTCTGTAGGGGCTTCCTTGGCCTCTGGAGTGGAGTTGTAGGTGAAAAGCGAGGAATTCAACTGGTAGGGCTGATGTTTCATGACATCCAGAACATTGAGATGCTTGGGTTGGGGATTCTTCTTCTCCTTGTTTGCTTTAGACTTAATTTTTGGACTAGTTGCAGGAGGGGGTTGCTTAACCGCTGCAAGGGGATAAAAGGGGGATAAAATGGGATTATAGGAGACTGGAGGTGGGGCACGGACATTAGAAGAGTATTTCCAAGTGCTTGGCATCGAAAATGTTGGCGATGAGGGTCTAGGTTTGTTGGCTCTCACAGTCTCATCGTCGACCACAAATTTTTCCATACGGGACTGTCTTCGAGCAAACAGTTCAGCTCCTTTTCCTTTAAGGTTCAGTCCTTCAGAAGCACCTGCATCTGATGAATACCCTTTAGGAGAAGATGATGGAGCCTTAGATCCCTGAAAGCATGTGCTCAGGTGTTGGGGTGGGCAGGAAGCAACAGAGTTACGATCACTTGATCTAACCCGTGATGTTTTAGACTGGGAAGGACCAGCACGAAGTGAATCTGGTGTACGTTGTGTCCAGGATGGTTGAGGCAGATCTGGAACCCAAGCAGGTGGTGGCTCCTGTGGTATTGGCTGAGATGACAATGGAAACCAGGCTTTTTCAGGAGACTGCTTTGGTGGGTTTTGTTGGGGTACTGCCTGCACCAGGGTGTTCCCCATAGCTGGGGCAAGGGGACTCTGATTCATGGGACGACGCTCTGCAGACCAAGGAGGGTGAGCTAGGTTTATGGCAGGTTTGGGCAGGACAGGTGGAGGATTTTTCTGTTTGATCTTTGGAGCTTGCATAAAATTGCACGCTTCTGCACCCAGACTGAAAAAATCTTCTTCTGGAAATGACTCTGTTAAGGACTTCTGATCTCCTTTTTTCTGAAGCAGAGGCATCTCTTTGGAGTCTGACTTCACTCCTCTTCTTTTAGCTTCTGGCAAGATCCCTGTTTTAATTGCAGGTATAGCAATACGTTCATCACGTGACGCAATTATGTCTGATGTTGGGGACCAAACCTGTGGGGTTGTGTTTACTGGAACAGGAACCTTGAATATGTTTTCAGGTTTCTTAGATGTTGGGCTTGAGACACTGCTTACTGGTGAAAAAGTTTTTCGTCCTTGATTGTGACCACCCAGAAAGGGCTTAGCAGTTCTGTTGGAGACAAGGGATCTGGAAACAGTCGAACCTTGATATGAATCCAGACCATTCAAACCATTTGCTGATTGTGGTAGCATCTGTTGCTGAAATGGATGATCTTGATACTGTTGTTGTTGCCTTAGATAGATATCTTGTGGGGCTTGGGCTTCTTCCAGCGGAGGAGACTTTACAGTTTCACCTTCTGGCTCAAAAACTGCATCCACTGGTATGCCTTTTCGTCTCATTTCCTCTTGTTCTGCGGAAAGCTCATCCATCCTTTGACGCCTCTGGGCAAACATCAAGACCCCCTTTCCTTTCGTCTGTGGAAGATGCTCCATTGTTTCCAAGTTTGACTTAGTCTGTACTTTGAAATTCTGTTGTAGCTTAAATCAGTCACGtggtattaaaaaatgaatattcttcTCAGAATCAGTGGAAATCTGTTCAGACTTTGTAGTGTACAAAGTACAATCTCATTCTCTTCCTAAAATCTGTCTTTGAGAAGCCGTACCACAGCTAACCAGCATGAACCTTCTGACCCTTTTTGACACCCTTCTTTCTGGGAGCAGCAAAATGCAAagtgttatgtttacatttagagTTGGCTTTTTCCGCTGTCTCACTGACTGTGCCTCACTCCATCTTAGTCCTAT
>TU4849
TATGAATCCAGACCATTCAAACCATTTGCTGATTGTGGTAGCATCTGTTGCTGAAATGGATGATCTTGATACTGTTGTTGTTGCCTTAGATAGATATCTTGTGGGGCTTGGGCTTCTTCCAGCGGAGGAGACTTTACAGTTTCACCTTCTGGCTCAAAAACTGCATCCACTGGTATGCCTTTTCGTCTCATTTCCTCTTGTTCTGCGGAAAGCTCATCCATCCTTTGACGCCTCTGGGCAAACATCAAGACCCCCTTTCCTTTCGTCTGTGGAAGATGCTCCATTGTTTCCAAGTTTGACTTAGTCTGTACTTTTGAAATTCTGTTGTAGCTTAAATCAGTCACGtggtattaaaaaatgaatattcttcTCAGAATCAGTGGAAATCTGTTCAGACTTTGTAGTGTACAAAGTACAATCTCATTCTCTTCCTAAAATCTGTCTTTGAGAAGCCGTACCACAGCTAACCAGCATGAACCTTCTGACCCTTTTTGACACCCTTCTTTCTGGGAGCAGCAAAATGCAAagtgttatgtttacatttagagTTGGCTTTTTCCGCTGTCTCACTGACTGTGCCTCACTCCATCTTAGTCCTAT
>TU4855
TATGAATCCAGACCATTCAAACCATTTGCTGATTGTGGTAGCATCTGTTGCTGAAATGGATGATCTTGATACTGTTGTTGTTGCCTTAGATAGATATCTTGTGGGGCTTGGGCTTCTTCCAGCGGAGGAGACTTTACAGTTTCACCTTCTGGCTCAAAAACTGCATCCACTGGTATGCCTTTTCGTCTCATTTCCTCTTGTTCTGCGGAAAGCTCATCCATCCTTTGACGCCTCTGGGCAAACATCAAGACCCCCTTTCCTTTCGTCTGTGGAAGATGCTCCATTGTTTCCAAGTTTGACTTAGTCTGTACTTTGAAATTCTGTTGTATAACTTAAATCAGTCACGtggtattaaaaaatgaatattcttcTCAGAATCAGTGGAAATCTGTTCAGACTTTGTAGTGTACAAAGTACAATCTCATTCTCTTCCTAAAATCTGTCTTTGAGAAGCCGTACCACAGCTAACCAGCATGAACCTTCTGACCCTTTTTGACACCCTTCTTTCTGGGAGCAGCAAAATGCAAagtgttatgtttacatttagagTTGGCTTTTTCCGCTGTCTCACTGACTGTGCCTCACTCCATCTTAGTCCTAT
>TU4860
CCCCAGAGATATCAGGAGGAAGGAAGTTTGAGATGCCTTTGTTTCTAGGGCCATCATGCATGGGTAGTTTTTTTCCCATGTAACTTTTGTGGAACAATGGTTGCTTCGTTTGATGTAGACTGATGAACAAATGGGTAAGGAACACTTACCTCTCCAGTGCCTTTAGATGGATTTTGCTTAACTGACTGCAAGCTATTTGGGGAGGGGGAGAATGCTGTAGAGGGCTCATAAGCAAGGGACTGGAAACTGGTAGGGGTTTGAGCAGAAGTTTGTTTAGACTCTGTAGGGGCTTCCTTGGCCTCTGGAGTGGAGTTGTAGGTGAAAAGCGAGGAATTCAACTGGTAGGGCTGATGTTTCATGACATCCAGAACATTGAGATGCTTGGGTTGGGGATTCTTCTTCTCCTTGTTTGCTTTAGACTTAATTTTTGGACTAGTTGCAGGAGGGGGTTGCTTAACCGCTGCAAGGGGATAAAAGGGGGATAAAATGGGATTATAGGAGACTGGAGGTGGGGCACGGACATTAGAAGAGTATTTCCAAGTGCTTGGCATCGAAAATGTTGGCGATGAGGGTCTAGGTTTGTTGGCTCTCACAGTCTCATCGTCGACCACAAATTTTTCCATACGGGACTGTCTTCGAGCAAACAGTTCAGCTCCTTTTCCTTTAAGGTTCAGTCCTTCAGAAGCACCTGCATCTGATGAATACCCTTTAGGAGAAGATGATGGAGCCTTAGATCCCTGAAAGCATGTGCTCAGGTGTTGGGGTGGGCAGGAAGCAACAGAGTTACGATCACTTGATCTAACCCGTGATGTTTTAGACTGGGAAGGACCAGCACGAAGTGAATCTGGTGTACGTTGTGTCCAGGATGGTTGAGGCAGATCTGGAACCCAAGCAGGTGGTGGCTCCTGTGGTATTGGCTGAGATGACAATGGAAACCAGGCTTTTTCAGGAGACTGCTTTGGTGGGTTTTGTTGGGGTACTGCCTGCACCAGGGTGTTCCCCATAGCTGGGGCAAGGGGACTCTGATTCATGGGACGACGCTCTGCAGACCAAGGAGGGTGAGCTAGGTTTATGGCAGGTTTGGGCAGGACAGGTGGAGGATTTTTCTGTTTGATCTTTGGAGCTTGCATAAAATTGCACGCTTCTGCACCCAGACTGAAAAAATCTTCTTCTGGAAATGACTCTGTTAAGGACTTCTGATCTCCTTTTTTCTGAAGCAGAGGCATCTCTTTGGAGTCTGACTTCACTCCTCTTCTTTTAGCTTCTGGCAAGATCCCTGTTTTAATTGCAGGTATAGCAATACGTTCATCACGTGACGCAATTATGTCTGATGTTGGGGACCAAACCTGTGGGGTTGTGTTTACTGGAACAGGAACCTTGAATATGTTTTCAGGTTTCTTAGATGTTGGGCTTGAGACACTGCTTACTGGTGAAAAAGTTTTTCGTCCTTGATTGTGACCACCCAGAAAGGGCTTAGCAGTTCTGTTGGAGACAAGGGATCTGGAAACAGTCGAACCTTGATATGAATCCAGACCATTCAAACCATTTGCTGATTGTGGTAGCATCTGTTGCTGAAATGGATGATCTTGATACTGTTGTTGTTGCCTTAGATAGATATCTTGTGGGGCTTGGGCTTCTTCCAGCGGAGGAGACTTTACAGTTTCACCTTCTGGCTCAAAAACTGCATCCACTGGTATGCCTTTTCGTCTCATTTCCTCTTGTTCTGCGGAAAGCTCATCCATCCTTTGACGCCTCTGGGCAAACATCAAGACCCCCTTTCCTTTCGTCTGTGGAAGATGCTCCATTGTTTCCAAGTTTGACTTAGTCTGTACTTTGAAATTCTGTTGTAGCTTAAATCAGTCACGtggtattaaaaaatgaatattcttcTCAGAATCAGTGGAAATCTGTTCAGACTTTGTAGTGTACAAAGTACAATCTCATTCTCTTCCTAAAATCTGTCTTTGAGAAGCCGTACCACAGCTAACCAGCATGAACCTTCTGACCCTTTTTGACACCCTTCTTTCTGGGAGCAGCAAAATGCAAagtgttatgtttacatttagagTTGGCTTTTTCCGCTGTCTCACTGACTGTGCCTCACTCCATCTTAGTCCTAT

Function

NR:

description
PREDICTED: synaptopodin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4844 False 2124 TUCP 0.45 2 14723545 14791788
TU4847 True 2853 TUCP 0.47 2 14768715 14791788
TU4849 False 600 TUCP 0.46 2 14725072 14791788
TU4855 False 601 TUCP 0.42 2 14725072 14791788
TU4860 False 2120 TUCP 0.46 2 14723545 14791788

Neighbor

gene id symbol gene type direction distance location
fabp2 fabp2,LOC107714631,LOC107572697,LOC107598258,LOC107700317,LOC107695844,LOC107757591 coding upstream 60444 14661658 ~ 14663101 (+)
gucy1b1 gucy1b3,LOC107714654,LOC107757623 coding upstream 64008 14644013 ~ 14659537 (+)
gucy1a1 gucy1a3,LOC107695445,LOC107572203,LOC107700279,LOC107598251 coding upstream 80306 14635220 ~ 14643239 (+)
si:dkey-30k22.5 LOC107695853,LOC107572196 coding upstream 116148 14605452 ~ 14607397 (+)
plrg1 plrg1,LOC107757621,LOC107695461,LOC107700313 coding upstream 134781 14583650 ~ 14588764 (+)
mxd4 mxd4,LOC107695376,LOC107714650,LOC107757594,LOC107700283 coding downstream 40915 14832703 ~ 14843409 (+)
ndufb6 ndufb6 coding downstream 56225 14848013 ~ 14849671 (+)
toporsa topors,LOC107695355,LOC107700322 coding downstream 58372 14850160 ~ 14853910 (+)
LOC122348129 mtap,LOC107595051,LOC107714626,LOC107700323,LOC107598256,LOC107757575,LOC102313215 coding downstream 62422 14854210 ~ 14861916 (+)
tet2 LOC107714646,LOC107695330,LOC107595052,LOC107598249,LOC107700324,LOC107757629 coding downstream 146949 14938737 ~ 14959108 (+)
G3370 NA non-coding upstream 44601 14672314 ~ 14678944 (+)
LOC122353352 NA non-coding upstream 99452 14620659 ~ 14624093 (+)
G3361 NA non-coding upstream 107628 14614933 ~ 14615917 (+)
G3326 fgg,LOC107745866,LOC107695488,LOC107714655,LOC107695473,LOC107700315,LOC107757622,LOC107572199 non-coding upstream 126998 14533015 ~ 14596547 (+)
G3324 NA non-coding upstream 191339 14531016 ~ 14532206 (+)
G3381 LOC107714625,LOC107695349,LOC107595098 non-coding downstream 70824 14862612 ~ 14869892 (+)
G3432 NA non-coding downstream 233922 15025710 ~ 15029067 (+)
G3443 NA non-coding downstream 245491 15037279 ~ 15037670 (+)
G3431 NA non-coding downstream 271463 15063251 ~ 15114948 (+)
LOC122350773 NA non-coding downstream 653400 15445188 ~ 15446124 (+)
npy2r npy2r,LOC107572195,LOC107714623,LOC107695741,LOC107757570,LOC107700264 other upstream 110868 14610244 ~ 14612677 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other upstream 119657 14602312 ~ 14603888 (+)
LOC122345399 NA other upstream 242199 14480198 ~ 14481346 (+)
G3187 gatb,LOC107695556,LOC107695902 other upstream 605112 14114431 ~ 14118433 (+)
slit2 slit2,LOC107700301,LOC107695646 other upstream 1137564 13516208 ~ 13585981 (+)
hemgn hemgn,trmo other downstream 239156 15030944 ~ 15034800 (+)
bnc2 bnc2,LOC107595060,LOC107737409,LOC107737408,LOC107678088,LOC107598241 other downstream 386815 15178603 ~ 15317624 (+)
G3599 NA other downstream 686310 15478098 ~ 15498680 (+)
G3647 NA other downstream 861305 15653093 ~ 15653381 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other downstream 1272483 16064271 ~ 16069915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_10550389_10552830 NA coding CI01000300 null 10550051 ~ 10555244 (-)