RNA id: TU4860


Basic Information

Item Value
RNA id TU4860
length 2120
RNA type TUCP
GC content 0.46
exon number 2
gene id G3380
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14723545 ~ 14791788 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCAGAGATATCAGGAGGAAGGAAGTTTGAGATGCCTTTGTTTCTAGGGCCATCATGCATGGGTAGTTTTTTTCCCATGTAACTTTTGTGGAACAATGGTTGCTTCGTTTGATGTAGACTGATGAACAAATGGGTAAGGAACACTTACCTCTCCAGTGCCTTTAGATGGATTTTGCTTAACTGACTGCAAGCTATTTGGGGAGGGGGAGAATGCTGTAGAGGGCTCATAAGCAAGGGACTGGAAACTGGTAGGGGTTTGAGCAGAAGTTTGTTTAGACTCTGTAGGGGCTTCCTTGGCCTCTGGAGTGGAGTTGTAGGTGAAAAGCGAGGAATTCAACTGGTAGGGCTGATGTTTCATGACATCCAGAACATTGAGATGCTTGGGTTGGGGATTCTTCTTCTCCTTGTTTGCTTTAGACTTAATTTTTGGACTAGTTGCAGGAGGGGGTTGCTTAACCGCTGCAAGGGGATAAAAGGGGGATAAAATGGGATTATAGGAGACTGGAGGTGGGGCACGGACATTAGAAGAGTATTTCCAAGTGCTTGGCATCGAAAATGTTGGCGATGAGGGTCTAGGTTTGTTGGCTCTCACAGTCTCATCGTCGACCACAAATTTTTCCATACGGGACTGTCTTCGAGCAAACAGTTCAGCTCCTTTTCCTTTAAGGTTCAGTCCTTCAGAAGCACCTGCATCTGATGAATACCCTTTAGGAGAAGATGATGGAGCCTTAGATCCCTGAAAGCATGTGCTCAGGTGTTGGGGTGGGCAGGAAGCAACAGAGTTACGATCACTTGATCTAACCCGTGATGTTTTAGACTGGGAAGGACCAGCACGAAGTGAATCTGGTGTACGTTGTGTCCAGGATGGTTGAGGCAGATCTGGAACCCAAGCAGGTGGTGGCTCCTGTGGTATTGGCTGAGATGACAATGGAAACCAGGCTTTTTCAGGAGACTGCTTTGGTGGGTTTTGTTGGGGTACTGCCTGCACCAGGGTGTTCCCCATAGCTGGGGCAAGGGGACTCTGATTCATGGGACGACGCTCTGCAGACCAAGGAGGGTGAGCTAGGTTTATGGCAGGTTTGGGCAGGACAGGTGGAGGATTTTTCTGTTTGATCTTTGGAGCTTGCATAAAATTGCACGCTTCTGCACCCAGACTGAAAAAATCTTCTTCTGGAAATGACTCTGTTAAGGACTTCTGATCTCCTTTTTTCTGAAGCAGAGGCATCTCTTTGGAGTCTGACTTCACTCCTCTTCTTTTAGCTTCTGGCAAGATCCCTGTTTTAATTGCAGGTATAGCAATACGTTCATCACGTGACGCAATTATGTCTGATGTTGGGGACCAAACCTGTGGGGTTGTGTTTACTGGAACAGGAACCTTGAATATGTTTTCAGGTTTCTTAGATGTTGGGCTTGAGACACTGCTTACTGGTGAAAAAGTTTTTCGTCCTTGATTGTGACCACCCAGAAAGGGCTTAGCAGTTCTGTTGGAGACAAGGGATCTGGAAACAGTCGAACCTTGATATGAATCCAGACCATTCAAACCATTTGCTGATTGTGGTAGCATCTGTTGCTGAAATGGATGATCTTGATACTGTTGTTGTTGCCTTAGATAGATATCTTGTGGGGCTTGGGCTTCTTCCAGCGGAGGAGACTTTACAGTTTCACCTTCTGGCTCAAAAACTGCATCCACTGGTATGCCTTTTCGTCTCATTTCCTCTTGTTCTGCGGAAAGCTCATCCATCCTTTGACGCCTCTGGGCAAACATCAAGACCCCCTTTCCTTTCGTCTGTGGAAGATGCTCCATTGTTTCCAAGTTTGACTTAGTCTGTACTTTGAAATTCTGTTGTAGCTTAAATCAGTCACGtggtattaaaaaatgaatattcttcTCAGAATCAGTGGAAATCTGTTCAGACTTTGTAGTGTACAAAGTACAATCTCATTCTCTTCCTAAAATCTGTCTTTGAGAAGCCGTACCACAGCTAACCAGCATGAACCTTCTGACCCTTTTTGACACCCTTCTTTCTGGGAGCAGCAAAATGCAAagtgttatgtttacatttagagTTGGCTTTTTCCGCTGTCTCACTGACTGTGCCTCACTCCATCTTAGTCCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4828 lncRNA upstream 44601 14672314 ~ 14678944 (+) True G3370
XR_006251986.1 lncRNA upstream 99452 14620659 ~ 14624093 (+) True LOC122353352
TU4813 lncRNA upstream 107628 14614933 ~ 14615917 (+) True G3361
TU4810 lncRNA upstream 110898 14612315 ~ 14612647 (+) False npy2r
TU4767 lncRNA upstream 126998 14591216 ~ 14596547 (+) False G3326
TU4862 lncRNA downstream 70824 14862612 ~ 14869892 (+) True G3381
TU4923 lncRNA downstream 233922 15025710 ~ 15029067 (+) True G3432
TU4956 lncRNA downstream 239257 15031045 ~ 15034800 (+) True hemgn
TU4958 lncRNA downstream 239257 15031045 ~ 15032957 (+) False hemgn
TU4966 lncRNA downstream 245491 15037279 ~ 15037670 (+) True G3443
XM_043249491.1 mRNA upstream 60444 14661658 ~ 14663101 (+) True fabp2
XM_043249375.1 mRNA upstream 64008 14644013 ~ 14659537 (+) True gucy1b1
XM_043249168.1 mRNA upstream 80306 14635220 ~ 14643239 (+) True gucy1a1
XM_043240244.1 mRNA downstream 40915 14832703 ~ 14843409 (+) True mxd4
XM_043248441.1 mRNA downstream 56225 14848013 ~ 14849671 (+) True ndufb6
XM_043243382.1 mRNA downstream 58372 14850160 ~ 14853910 (+) True toporsa
XM_043243393.1 mRNA downstream 62422 14854210 ~ 14861916 (+) True LOC122348129
XM_043234871.1 mRNA downstream 146949 14938737 ~ 14959108 (+) True tet2
TU4804 other upstream 119696 14602676 ~ 14603849 (+) False lrata
TU4698 other upstream 242199 14480244 ~ 14481346 (+) True LOC122345399
TU4563 other upstream 605112 14114431 ~ 14118433 (+) True G3187
TU4564 other upstream 608105 14114431 ~ 14115440 (+) False G3187
TU4406 other upstream 1517857 13203253 ~ 13205688 (+) False rhoh
TU5171 other downstream 686310 15478098 ~ 15498680 (+) True G3599
TU5228 other downstream 861305 15653093 ~ 15653381 (+) True G3647
XR_006251846.1 other downstream 2781333 17573121 ~ 17608841 (+) False gab1
XR_006251260.1 other downstream 3455462 18247250 ~ 18282761 (+) False dclk2a
XR_006251261.1 other downstream 3455464 18247252 ~ 18282761 (+) False dclk2a

Expression Profile