G4195


Basic Information

Item Value
gene id G4195
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 17610874 ~ 17611305 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU5993
tttttttttcgtCGGCCCCTCCTCCTCAGTTTTGACGAACACGTAGGTGCCAGATTGACGACACCAACAGGAACGAGCGGACATGACggtgaatgaaatgaaacgtACTGTATTTTTTCACCAACTGACAACACAGACCAAAGCAAACACAGACATTCTGGACGCACATCTTCAAAAGGAGAATAACTGACTTTAGCATCGTTTTTCAGATAAAGATGTTGGCATgcttcttaaatatctgcaaacatacggtatttttatgctttagtaaagccaaaaacttttacaaaaaaattaaaaggacagttcaccTTTTGTGAATGTGTGGCAGAGACTGATATGTAAGAGAAGAAATctttgaatgaattttttttttgtctttgcaaGTATTCACATAGCTTCATAAACTTAAACATAAACTGTGTTTTGAAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5993 True 432 lncRNA 0.45 1 17610874 17611305

Neighbor

gene id symbol gene type direction distance location
LOC122348766 dok7,LOC107749932,LOC107679881,LOC107674231,LOC107714234,LOC107552150 coding downstream 178024 17422562 ~ 17432850 (-)
LOC122341421 zdhhc5a,LOC107746524,LOC107674225,LOC107556824,LOC107730508,LOC107551501,LOC107664565,LOC108412478 coding downstream 198153 17383556 ~ 17412721 (-)
pnpla4 pnpla4,LOC107708662,LOC107691610 coding downstream 692824 16909370 ~ 16918050 (-)
nt5c2b nt5c2b,LOC107568788,LOC107738462,LOC107602759,LOC107704322,LOC107699105,LOC108435980 coding downstream 794998 16795040 ~ 16815876 (-)
dpcd dpcd,LOC107704327,LOC107708668,LOC107699082,LOC107602740,LOC107568794,LOC107738465 coding downstream 874816 16733140 ~ 16736058 (-)
frem3 frem3,LOC107550584,LOC107654895,LOC107734585,LOC107725184 coding upstream 204 17611509 ~ 17636279 (-)
si:dkey-27h10.2 NA coding upstream 29595 17640900 ~ 17654486 (-)
LOC122348788 LOC107742553,LOC107684450,LOC107551967 coding upstream 159949 17771254 ~ 17772453 (-)
LOC122348811 LOC107551967 coding upstream 172868 17784173 ~ 17786335 (-)
prmt9 prmt9,LOC107742543 coding upstream 482879 18094184 ~ 18101595 (-)
G4072 LOC107661227 non-coding downstream 324867 17285648 ~ 17286007 (-)
G4051 NA non-coding downstream 578868 17031747 ~ 17032006 (-)
G4049 NA non-coding downstream 579893 17030749 ~ 17030981 (-)
G4035 NA non-coding downstream 627029 16979091 ~ 16983845 (-)
G4001 NA non-coding downstream 739886 16869971 ~ 16870988 (-)
G4251 NA non-coding upstream 277843 17889148 ~ 17889478 (-)
G4259 ednraa,LOC107598731,LOC107670705,LOC107550651 non-coding upstream 465668 18076973 ~ 18077402 (-)
G4280 NA non-coding upstream 536849 18148154 ~ 18148464 (-)
G4401 NA non-coding upstream 1059713 18671018 ~ 18671323 (-)
G4413 wdr17,LOC107737118 non-coding upstream 1235364 18846669 ~ 18850360 (-)
LOC122330431 lsm6 other downstream 174167 17434717 ~ 17436707 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1162355 16447088 ~ 16448519 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other downstream 1251849 16334202 ~ 16359025 (-)
march4l zgc:153256,march9,LOC107719730,LOC107654275,LOC107556712,LOC107707834,LOC107699089 other downstream 1412611 16159692 ~ 16198263 (-)
alg11 alg11,LOC107556718,LOC107588826,LOC107705036 other downstream 1536954 16069177 ~ 16073920 (-)
smad1 smad1,LOC107684445,LOC107734580 other upstream 134532 17745837 ~ 17764732 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other upstream 200154 17811459 ~ 17880417 (-)
cdk2ap2 cdk2ap2,LOC107684972 other upstream 1924659 19535964 ~ 19539146 (-)
si:dkey-9i23.16 NA other upstream 2525730 20137035 ~ 20140579 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 2678012 20289317 ~ 20312948 (-)

Expression


Co-expression Network