G4413 (wdr17,LOC107737118)


Basic Information

Item Value
gene id G4413
gene name wdr17,LOC107737118
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18846669 ~ 18850360 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU6285
attttttgaacatttttaattatattttagttaattatgctattttatttaatgttttttatttatattagacAAATCTCTATGAAATGTAACATCAAATGTTTAATGATCATAATTTTTTATGTCATCAAAACCATGTACAATTTTTTAGCAATTCTGCAttagatcaaaaatatagtgaaaacagtaagactgtaaaatattagcattaaaaattattattttctgtttttaatatatttttatgtaatttattaatgtgatgtgAAAGCTCGGCAGGTATTATTCTAGTTGTCACtgttatatgctgatttgctgcttcaAAGTTGAAAACGGTTATTCTCAATAgctatttttgtggaaaatgtcaaaagaatataatttatttgaagagattgtttttgtaataatgtaaagtaTTTTACCTTTGCTACTGACCAATTGTGTAGCGTAGCCTATATTAGGAGAGCAAATGAAGATTTAGTTGAACAATTACCCATCATCTGAGCCGCTGCACAGTATGCCCTCTCTGAGAGGTGACCAGCGCACATGGAATACTTTGGCCGTGTGACCGGTAAAGACTTTGAGTGGTTGGTCTGAACTAGTGGCCAAATAATAGACTCGAACATTCTTGTCTTCACAGCCAGTGGCAATCATATCTCTGTGTGagtacgagagagagagagtaagagagagacagacacacaatgCAGAATTGTGATAATGAGATAATAATACAGGTAAAGTTCTGACATCTGTGTATGTAATTGATTAATACACAAACTTGTTATTTTGACTCCAGTCACAGCCAAACACTGCTGCTGggtgtttatatttatgcaacACCTTGCCATCAAGGGTTCGTATTATGctgaaatcaaaaaaaaaaaaaaaaagtaagaatgtCACATCTATGAGAATAACACGACTGCATTGCATCTATGGACTAAGTGGAAACTTGTGAAAATGTTATTCAAGAATACAAACAGACCAAAATCCATCTCCACTGCATGTGGCTATTCTTTTGGAATCTTTATGGCTCCAAGCAACACAAAAAATACCATTCTTCCCGTGCTGCAACACAATTGCAGTCAAAATAAAGACCCATGCTAACTATGAAGATTGTtgcaatcaaaattaaaagaacaaatattCATTCTCAATAATTAATAACTGTGAGATTTctggataaataaaaataaataaataaataaaaagtgcttgCCTCATTAAATCTTGTTatcattttccctttttttacaTCCCAAATGAAGGCGCCATTTCTTGATGTGGCTCCTGCTATGCAGTTCAAATCTCCTTCGgGGGCCCATGACAGAGAATAAACCACTCCCTCATTGCCCGGAGACGTATACACAGcagttaatgtgtttatatCCCAGACTTTTATCGTCCCATCGAATGAAGCTGTAGCTAAAAGGTTTGGATCATCTGGCTTGAATTTGCAGTCGAAGATAGTTTCAACATGACCctgggagaaaaaaagtcacaaaataacaaaattacgAAAAGgtttaactacatttaaaatgaaatctgaaaacgtaaataataacaagaaaaaatataataggatacaaataatacaaattattctaattattgTAATTCACTGACAAATCtgaaaccaaattaaaaaatatgtggtCTTGTATGTGACAGTTAAAATGTGAGTCAGACAAATGATGCTTAATCAGTGGCACAAGGAAGCTGCACATCTCATGATATAACCATCAGTACATGTGAtattaatgctaaaaacaacacatttgaGTTCAGACTGATGACttattgaaaatgaatgcagcACCACTTAATGCACACCTGAGGtctgcacattttgttttgtgtcgtGGGTGCATTATCACCTCAGGTGTGCATTAATTTATGACAAATCAGTAGTCAATTATTCCTTACTTAACCATGGGGTGAAAcggttttatttcttcatcataaataacatttaaagcaaCTAAAAGAGCTGTTTGTTGAGAAAATAACATGCATATTTGCTGAATTGTTTAggagacttttaaaaaaagactgaaaatgaCTCTTCAAAAGCAAGGTgactaatataaaaacatttctaaacttTAGGGGTTTTCAtcaatgcatttactttttcattacAACTTAACCTAAAAAAATcccagttttttttaagtgtaggGTACTTTCatgatattaaatgtaaaaactttcaATATATGTTAACCCACAGGTAACAGCATGCCACTTTTTCTACCAGATCCCGCAGGAAGTCCCACTTTTTGGAGCCCATATCATACAGTCCAACCCCCCCATCCATGAAACAGCAGACAGCATGGCcgggagggagagagaaggCCTGGTTCTGTGAAAGAGTAGGTGGAGGCACAGCCTCACTAGTGGAGGAGGTGTAGTGATTCTTGGAAGGGGAATTCGTGCTAAAGGCTAAAAGAGAAATGACAACACTGGCTATGTTTACATGTGCACCAATAATCTGCTTATTCGCATTAAGGAGTTTACATGACATAAGCAAACCTCTTCACTCCCCGTTTACATGCGATTTTTCATTATTCTGCGTGTTTGCCAAGAATTTAGGTTACTTTAACCCGCtttaatcaaatgcaaaacacattacTCTGGATACACTAAATGGCTATTTGGTGGCCGTGATGAAGATTAAATGTGATACACAGCCAATGCTATGATTCAGAGTGGAGTGTAAACTTCTCAAACTCCATCATGATGGAGTTCATTTATGGAGTTGTGTGAACAATGTGAAGttgttttggaaataaatatttataatttgtataCACCACATATTTTACTATAATTACTGTGACTATGAGTGTAATTGCATAAATTTGATCAAAGCATCTCATATTTGATCTCATAATCTCATTGTAATTCATTAAGAACGTAGACATTGTGATGGTAAACATGAAAACACGTACATTTCTTCGCTGGTGGGGAATTTAAAACATGCAGTGCATGGAAGCCAGTTTTCTTCAGTTTGAAGTTGTCCAGAGGTGTCGCTCTTGATACGTTCCATATTCTCAGCACGCCAACTTGAGAATCTTGAGaattcaatataataaaacaaacattttttagtgGTTCAGCTGTGCAAATATAGTGTTCCATTTCACCAAGTGTTCCACTTTAAACTACTCCCCTtctgttaaaattattattgcgttaaaatgtaaatgtaattaataattaaatgagagTTCTAAAATCAGATCAAAGCTGGCCTCTTAAGCTAAAAACTACTATTTCCCACTGGCTCTTCTGTGCGTATTTATCTTACCCCCTGTGATAAACATGCCAGGGGCACTGGGCACCCAGGCCAGGCATTGCACAGAGGCAGCGGCACTAGGGAAACTAAAGGTTGTGATGCAGGATAGAGATTCAGAGTCCAGCAATCTGATGCCGTTGTGCATGTTGGCCACCAGCAGGTAGTCTGTGCTGAGAGGGTCCCATTCTAGAGCTGTGACGGGGTCCTCTTCATCTGTGCCTTCTAGTGACTCGGGACGCAGCACATGCTTCTGATTCTTTGAGC

Function

symbol description
wdr17 Acts upstream of or within lens development in camera-type eye. Orthologous to human WDR17 (WD repeat domain 17).

NR:

description
PREDICTED: WD repeat-containing protein 17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6285 True 3574 lncRNA 0.36 2 18846669 18850360

Neighbor

gene id symbol gene type direction distance location
gpm6ab gpm6ab,LOC107737106,LOC107752222,LOC107670876,LOC107676686 coding downstream 8145 18794142 ~ 18838524 (-)
glra3 glra3,LOC107670853,LOC107737127,LOC107752223,LOC107552004 coding downstream 98956 18708612 ~ 18747713 (-)
hpgd hpgd,LOC107552502,LOC107752225,LOC107676678,LOC107558775,LOC107737128 coding downstream 138191 18701629 ~ 18708478 (-)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 coding downstream 159290 18679667 ~ 18687379 (-)
hand2 hand2,LOC107552491,LOC107752229,LOC107670807,LOC107676684,LOC107558779 coding downstream 225507 18619213 ~ 18621162 (-)
asb5b asb5,asb5b,LOC107670925,LOC107752221,LOC107676689,LOC107737104 coding upstream 8631 18858991 ~ 18867807 (-)
vegfc vegfc,LOC107752233,LOC107670960,LOC107558783,LOC107676691,LOC107737103,LOC107552015 coding upstream 35147 18885507 ~ 18915936 (-)
dctd dctd,LOC107671033,LOC107550883,LOC107684975 coding upstream 595558 19445918 ~ 19464201 (-)
tmem134 tmem134,LOC107737124,LOC107671531,LOC107684976 coding upstream 619143 19469503 ~ 19473821 (-)
stox2a stox2a,stox2,LOC107550915,LOC107748824,LOC107671062,LOC107559650,LOC107684970,LOC108434127 coding upstream 625630 19475990 ~ 19518637 (-)
G4401 NA non-coding downstream 175346 18671018 ~ 18671323 (-)
G4280 NA non-coding downstream 698205 18148154 ~ 18148464 (-)
G4259 ednraa,LOC107598731,LOC107670705,LOC107550651 non-coding downstream 769267 18076973 ~ 18077402 (-)
G4251 NA non-coding downstream 957191 17889148 ~ 17889478 (-)
G4195 NA non-coding downstream 1235364 17610874 ~ 17611305 (-)
G4433 NA non-coding upstream 18972 18869332 ~ 18872844 (-)
LOC122332954 LOC108434131 non-coding upstream 562889 19413249 ~ 19440859 (-)
G4590 NA non-coding upstream 678391 19528751 ~ 19529251 (-)
G4596 NA non-coding upstream 690224 19540584 ~ 19541350 (-)
G4597 lgi2b,LOC107671185,LOC107550949,LOC107748826,LOC108263253 non-coding upstream 692616 19542976 ~ 19544360 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 966252 17811459 ~ 17880417 (-)
smad1 smad1,LOC107684445,LOC107734580 other downstream 1081937 17745837 ~ 17764732 (-)
LOC122330431 lsm6 other downstream 1409962 17434717 ~ 17436707 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 2398150 16447088 ~ 16448519 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other downstream 2487644 16334202 ~ 16359025 (-)
cdk2ap2 cdk2ap2,LOC107684972 other upstream 685604 19535964 ~ 19539146 (-)
si:dkey-9i23.16 NA other upstream 1286675 20137035 ~ 20140579 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 1438957 20289317 ~ 20312948 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 1516769 20367129 ~ 20369111 (-)
G4958 NA other upstream 1833482 20683842 ~ 20686740 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G209452 NA non-coding CI01000049 null 5881416 ~ 5885107 (-)