vegfc (vegfc,LOC107752233,LOC107670960,LOC107558783,LOC107676691,LOC107737103,LOC107552015)


Basic Information

Item Value
gene id vegfc
gene name vegfc,LOC107752233,LOC107670960,LOC107558783,LOC107676691,LOC107737103,LOC107552015
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18885507 ~ 18915936 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043248014.1
AGGGGGAGGGAGAAGGATCCAAAGTAACAGCGTGAAATTGCATAAAACATGCCATTGAGCGCTCCGCGCACTTCCACACTCTCTTCGCACGGAGTGGATGTTCACAACCGTTTGTGAAGGGACGAACTCACAGTGCATTCCATGGACCAGTATCGAAGTGCCTTCTTAAAATGTTGGATATATACATGggtgttattttagtgtaagGACAGAGTTTTCTAGAAACCTGCtgctgaaagctgaaaaaagaGGAACTTCCAACAGACTCTGCTCAGActtcagagattttttttcgtctaaaatgcacttatttggAATTTCTGTCTTTTGTCTCGCATTAATTTATGCAAACCTTGCTTTGGAGTCAAGTCACGACTactatgattatgattatgaccAAGATCAAGGGGATGCTATGGAGCATTCAGAGCCAGACCTGGTGGAGCAGTTGCGTTCAGCTGGTAGCGTGGATGAGCTTATGAGGATAGTTTACCCGAGCTACTGGAGCATGCTGAAGTGTCGTTCCAAGATGGGATCACGCTTACCTCACAGAGATCACAGCTCCACAGAAACAAGGTCGGAGGAGGCCTCCTATGCGGCTGCTTACATCAATCTTGAAATTTTTACAAGTATTCAGACAGAGTGGAGAAACACCCTGTGCATGCCACGCCAAGTTTGTTTAGATGTGGGGAAAGAGTTTGGGGCAGCTACAAACACCTTCTATAAACCACCCTGCGTGTCTGTCTACAGATGTGGGGGCTGCTGTAACAGTGAGGAGCAAGTGTGCAAGAACATGAGCACTTCATACATCAGCAAGACGTTGTTCGAAATCACAGTTCCTATGAAGTATGGGGCCAAGCCAGTCACCATAAGCTTCGCCAACCACACTTCCTGCAGCTGTTTGTCAAAACAGGATTTGTACCGACAGCAGCACTCAATAATTCGAAGAGCCTTACCAGAATGTCATGTGGCAAATAAAACATGCCCAAAGAATCACAGCTGGAGCAATCGCTTATGCAGATGTGTGCCACTGCCCGACACCCTTTTTTCAAAACCACATTCTGACATGGAGCAAGACTTCTGCGGCCCAGACAAAGAGTTGGACGAGGAGACTTGTCAATGTGTTTGCCGAAAAGAGCTGCGAACGGCAGGCTGTGGACCGCACCGCTACCTGGACAAGAACacctgtcagtgtgtgtgtaaaacgaAGCCCTCTTCCTGCAGGCCTCAAATGAGCTTCAACAGGGACACTTGCCAGTGCACCTGCTCCAAGATGTGTCCTAGCAGTCAGCCTCTCAACCGCACCAAGTGTCTGTGTGAATGCACAGAGTCCCCTAACAAGTGCTTCTTAAAAGGAAGGCGCTTCCATCCGGCCTCGTGCAGttgcgTCAGGCCGCCATGTAACGTGGACCCCAAAAAAAGAGGATGTAACGATAATGAGTATTTCAGCGAAGAACTGTGTCGCTGTATACCCACATACTGGGGAAGACTGAACTAAACACAACTAAGCGCAGGTGGCGCTGAATGCTAACAGACTCGCTGACATTTAGAGCAGTGCTGTGTTTGGCCGCTGCTTATCTGACTCACATGTGCTAGTCGTGTGGACTAGCGTTGAGTAACGGGAGACAAGAAATGTCCACATTCAACCCCACATATCGAGCATGGGGTGTGCTATCAAGGACCGAGAGAGATTTCTAAAGGCTGgagccatgttttttttcattgttttaattgaattgtCTATTGGTATTTGTCAGataatgattatataatttattgccatgaaatgttttgaaactcCCTGGTTCATAGCATTCATTTCGAATCTCTGCGAAGAAAAATACACTGTGATCAATATTTTTGTATCATGTTAAGTCccgtaaaataaagtattaagttgtattatatattgttaacTTATTTATAAGCTAGACTATCTTATTGAAATAATACTGCACATGATTCAAATGTATTCAGTTTTGTCTACCAAATATATGCGCCTATCATTCCAGATTACATTCTATCAAACTAACAGTGCAAGCCGGCAAAGACATGTTTTTTGTGCTGGAAGCATTGCTTGTTGACAATCTAAGACCATTACGCAAGTCAACCGACAATATCAAAGACTCTGAACAGGGACATTAACCTGGATATGAACAGTTTAAAAAACGGTGCTACATGTATGCAGTTCCATAAGAGTCACATCGGAGACAACGTTCACAAGGATTAATGGATTTCTCTTACGTCACATCCAACCTGCCTCCTTAAAAGCAGTATAAAGTGGAGAAAGTGGTGTATGAATGACCTCGAGACTGGAGATCAGCGGTCTTTAAGACTCTTGACCTCAGTGGATGTGTACATAGCAGCAATGTGATTGGCCCAACTCCACATGGTATATGCCCACTGTTTCAGCTTGacactgtaaatataataaatcaccTCTGCTTCCATTCTA
>XM_043248025.1
GAGAGGGGGAGGGAGAAGGATCCAAAGTAACAGCGTGAAATTGCATAAAACATGCCATTGAGCGCTCCGCGCACTTCCACACTCTCTTCGCACGGAGTGGATGTTCACAACCGTTTGTGAAGGGACGAACTCACAGTGCATTCCATGGACCAGTATCGAAGTGCCTTCTTAAAATGTTGGATATATACATGggtgttattttagtgtaagGACAGAGTTTTCTAGAAACCTGCtgctgaaagctgaaaaaagaGGAACTTCCAACAGACTCTGCTCAGActtcagagattttttttcgtctaaaatgcacttatttggAATTTCTGTCTTTTGTCTCGCATTAATTTATGCAAACCTTGCTTTGGAGTCAAGTCACGACTactatgattatgattatgaccAAGATCAAGGGGATGCTATGGAGCATTCAGAGCCAGACCTGGTGGAGCAGTTGCGTTCAGCTGGTAGCGTGGATGAGCTTATGAGGATAGTTTACCCGAGCTACTGGAGCATGCTGAAGTGTCGTTCCAAGATGGGATCACGCTTACCTCACAGAGATCACAGCTCCACAGAAACAAGATGTGGGGGCTGCTGTAACAGTGAGGAGCAAGTGTGCAAGAACATGAGCACTTCATACATCAGCAAGACGTTGTTCGAAATCACAGTTCCTATGAAGTATGGGGCCAAGCCAGTCACCATAAGCTTCGCCAACCACACTTCCTGCAGCTGTTTGTCAAAACAGGATTTGTACCGACAGCAGCACTCAATAATTCGAAGAGCCTTACCAGAATGTCATGTGGCAAATAAAACATGCCCAAAGAATCACAGCTGGAGCAATCGCTTATGCAGATGTGTGCCACTGCCCGACACCCTTTTTTCAAAACCACATTCTGACATGGAGCAAGACTTCTGCGGCCCAGACAAAGAGTTGGACGAGGAGACTTGTCAATGTGTTTGCCGAAAAGAGCTGCGAACGGCAGGCTGTGGACCGCACCGCTACCTGGACAAGAACacctgtcagtgtgtgtgtaaaacgaAGCCCTCTTCCTGCAGGCCTCAAATGAGCTTCAACAGGGACACTTGCCAGTGCACCTGCTCCAAGATGTGTCCTAGCAGTCAGCCTCTCAACCGCACCAAGTGTCTGTGTGAATGCACAGAGTCCCCTAACAAGTGCTTCTTAAAAGGAAGGCGCTTCCATCCGGCCTCGTGCAGttgcgTCAGGCCGCCATGTAACGTGGACCCCAAAAAAAGAGGATGTAACGATAATGAGTATTTCAGCGAAGAACTGTGTCGCTGTATACCCACATACTGGGGAAGACTGAACTAAACACAACTAAGCGCAGGTGGCGCTGAATGCTAACAGACTCGCTGACATTTAGAGCAGTGCTGTGTTTGGCCGCTGCTTATCTGACTCACATGTGCTAGTCGTGTGGACTAGCGTTGAGTAACGGGAGACAAGAAATGTCCACATTCAACCCCACATATCGAGCATGGGGTGTGCTATCAAGGACCGAGAGAGATTTCTAAAGGCTGgagccatgttttttttcattgttttaattgaattgtCTATTGGTATTTGTCAGataatgattatataatttattgccatgaaatgttttgaaactcCCTGGTTCATAGCATTCATTTCGAATCTCTGCGAAGAAAAATACACTGTGATCAATATTTTTGTATCATGTTAAGTCccgtaaaataaagtattaagttgtattatatattgttaacTTATTTATAAGCTAGACTATCTTATTGAAATAATACTGCACATGATTCAAATGTATTCAGTTTTGTCTACCAAATATATGCGCCTATCATTCCAGATTACATTCTATCAAACTAACAGTGCAAGCCGGCAAAGACATGTTTTTTGTGCTGGAAGCATTGCTTGTTGACAATCTAAGACCATTACGCAAGTCAACCGACAATATCAAAGACTCTGAACAGGGACATTAACCTGGATATGAACAGTTTAAAAAACGGTGCTACATGTATGCAGTTCCATAAGAGTCACATCGGAGACAACGTTCACAAGGATTAATGGATTTCTCTTACGTCACATCCAACCTGCCTCCTTAAAAGCAGTATAAAGTGGAGAAAGTGGTGTATGAATGACCTCGAGACTGGAGATCAGCGGTCTTTAAGACTCTTGACCTCAGTGGATGTGTACATAGCAGCAATGTGATTGGCCCAACTCCACATGGTATATGCCCACTGTTTCAGCTTGacactgtaaatataataaatcaccTCTGCTTCCATTCTA

Function

symbol description
vegfc Enables vascular endothelial growth factor receptor binding activity. Acts upstream of or within several processes, including motor neuron axon guidance; transmembrane receptor protein tyrosine kinase signaling pathway; and vasculature development. Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. Is expressed in several structures, including blood vessel; brain; hypochord; nucleate erythrocyte; and trunk. Human ortholog(s) of this gene implicated in breast carcinoma and hereditary lymphedema ID. Orthologous to human VEGFC (vascular endothelial growth factor C).

NR:

description
Vascular endothelial growth factor C

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0048845 venous blood vessel morphogenesis biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0001938 positive regulation of endothelial cell proliferation biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0016020 membrane cellular_component
GO:0005172 vascular endothelial growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K05449 VEGFC_D; vascular endothelial growth factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043248014.1 True 2455 mRNA 0.44 7 18885507 18915933
XM_043248025.1 False 2284 mRNA 0.44 7 18885507 18915936

Neighbor

gene id symbol gene type direction distance location
asb5b asb5,asb5b,LOC107670925,LOC107752221,LOC107676689,LOC107737104 coding downstream 17700 18858991 ~ 18867807 (-)
gpm6ab gpm6ab,LOC107737106,LOC107752222,LOC107670876,LOC107676686 coding downstream 46983 18794142 ~ 18838524 (-)
glra3 glra3,LOC107670853,LOC107737127,LOC107752223,LOC107552004 coding downstream 137794 18708612 ~ 18747713 (-)
hpgd hpgd,LOC107552502,LOC107752225,LOC107676678,LOC107558775,LOC107737128 coding downstream 177029 18701629 ~ 18708478 (-)
fbxo8 fbxo8,LOC107670846,LOC107752227,LOC107676676 coding downstream 198128 18679667 ~ 18687379 (-)
dctd dctd,LOC107671033,LOC107550883,LOC107684975 coding upstream 529982 19445918 ~ 19464201 (-)
tmem134 tmem134,LOC107737124,LOC107671531,LOC107684976 coding upstream 553567 19469503 ~ 19473821 (-)
stox2a stox2a,stox2,LOC107550915,LOC107748824,LOC107671062,LOC107559650,LOC107684970,LOC108434127 coding upstream 560054 19475990 ~ 19518637 (-)
ing2 ing2,LOC107550937,LOC107671086,LOC107748834,LOC107737097,LOC107684977 coding upstream 605403 19521339 ~ 19523454 (-)
si:dkey-117m1.4 LOC107671095,LOC107748830,LOC107551007,LOC107674247,LOC107559642,LOC107737095 coding upstream 638504 19554440 ~ 19571705 (-)
G4433 NA non-coding downstream 12663 18869332 ~ 18872844 (-)
G4413 wdr17,LOC107737118 non-coding downstream 35147 18846669 ~ 18850360 (-)
G4401 NA non-coding downstream 214184 18671018 ~ 18671323 (-)
G4280 NA non-coding downstream 737043 18148154 ~ 18148464 (-)
G4259 ednraa,LOC107598731,LOC107670705,LOC107550651 non-coding downstream 808105 18076973 ~ 18077402 (-)
LOC122332954 LOC108434131 non-coding upstream 497313 19413249 ~ 19440859 (-)
G4590 NA non-coding upstream 612815 19528751 ~ 19529251 (-)
G4596 NA non-coding upstream 624648 19540584 ~ 19541350 (-)
G4597 lgi2b,LOC107671185,LOC107550949,LOC107748826,LOC108263253 non-coding upstream 627040 19542976 ~ 19544360 (-)
G4600 NA non-coding upstream 636692 19552628 ~ 19553146 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 1005090 17811459 ~ 17880417 (-)
smad1 smad1,LOC107684445,LOC107734580 other downstream 1120775 17745837 ~ 17764732 (-)
LOC122330431 lsm6 other downstream 1448800 17434717 ~ 17436707 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 2436988 16447088 ~ 16448519 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other downstream 2526482 16334202 ~ 16359025 (-)
cdk2ap2 cdk2ap2,LOC107684972 other upstream 620028 19535964 ~ 19539146 (-)
si:dkey-9i23.16 NA other upstream 1221099 20137035 ~ 20140579 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 1373381 20289317 ~ 20312948 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 1451193 20367129 ~ 20369111 (-)
G4958 NA other upstream 1767906 20683842 ~ 20686740 (-)

Expression


Co-expression Network