fbxo8 (fbxo8,LOC107670846,LOC107752227,LOC107676676)


Basic Information

Item Value
gene id fbxo8
gene name fbxo8,LOC107670846,LOC107752227,LOC107676676
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18679667 ~ 18687379 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233942.1
GAGGAGGCGGAGAGACTGACAGGAGGAGCGAGTGACCTGATGAATGATAGTGTCACAGGACCGTCTCACCTCGATCAGCGGTGTTGGAGCTGTCAAGATGGCTGTCCTGGGCTCCTGTTAAAAGACTGCGATAATTTCATCCGTGAGACAGTGGCAGATCAGCACGTCATTTCGTCGCGGCGGCGGTAGAAGTATTTCACATACACAGAGATCTGCAGATGGGTCAGGGTCTGTGGAGGGTGGCGAGGAAccagcagctgcagcagcagTACAGTGAACAGTGCTTCCTCCAGCGGGACAGAGAGCGGGGCCGGAGGCTGGGGCCCTCACTGGCTGAGCCGCTGGCGCAGCGCCGCACACCGCAGTGCCAGGTGCCCGGCGCCGACATCAGCCACCTGCTGCGCGTCCGCAAGGGCAAAGAGGAGCAGGGCTTCATCGATCTTGAGATGCTGCCGCCCGAACTCAGCATCACCATCCTATCCTACCTGAATGCAACCGACCTGTGCCTGGCCTCCTGCGTGTGGCAGGACTTGGGGAATGATGAGTACCTGTGGCAGGGCCTGTGCAAGTCCACTTGGGGTCACTGTTCCATATACAACAGAAGGCTTCCATCTGGATTCTCATACAGAAGACTCTACATGGAATTAGATGAAGGAAGTCTAACCTTCAACGCCAACCCGCAAGAGGGTATCAGTTACTTCATGTCCAGAGGTATTCTTGTGGACCACCCGAAGGAAATTGCCAAGTTTATATTCTATACCAGAATGCTGAATTGGAAGATGCTGCGGATTTATCTCGATGAacgGCGAGATGTCTTGGACGAGCTTGTCACACTTCATAACTTTAGCAACCAGTTCCTCCCTAATGCACTGAGAGACTTCTTCAGACACATTCATGCCCCGGAGGAGAGGGGCGAGTACCTGGAGACCCTCATCACTAAGTTTTCTCATCGTTTCTGTGCCTGTAACCCCACTCTGGTGCAGGAAGTGGGCTTAAGTCCTGATGCAGTGTACGTGCTGTGCTACTCCCTCATCCTCCTCTCCATCGACCTGACCAGCCCTCACGTCAAGAACAAGATGTCCAAGAGGGAGTTCATCCGAAACACACGGCGGGCCGCTCAGAACATCAGCGAGGACTTCGTAGGGCACCTCTACGACAACATCTATCTGATCGGCCACGTGGCGGCCTAGGCACTACAGCGCTCGACGCgttagagagagagactgcCGGCGCGCTAAACATTAGCGACTGCACTAGGAGACATTCTGCTTGAAGCTGGAAGAAACGCTGTCAGAACTCTGCGGgtctttttaaattgaaatcttGTGAGTGAAGCCCTTGATAAGACGTGCTGCGTTGCGGCAGGAGCGGAGGACGGTCACAATGTGAAGAATCAGCAAAGTCGGTTGTTAGCAGGCTAGCAAAACGGTAGCAACAAGGTTTACCTACCACAAAccaattaaacatgcaaaaccATGTAGCTACATGAAGATATATGAGATAAGCTATGAAGTCAGTTAAAGCTGAATGTAGACTTTACGGGGCTTTGCGTCATATTTACaaagacatcttttttttttttctcgttttaaTTTGGAAACCTCTCGCGCTTATCAAATGAATGTCAGGTTTTTTGCCATATCTACAAAATTCAGGCAAGTCTGAGGCATTCAGTCTACGGTCACTGTGATATCAAAGGACTGACAGACTAAAACGGCACACTTATACTATCGATTATGAACAAAcgcattttttcattttaaatctgtgtgTACTTGCTTGTTTTAGGGGGCTCTGTGTTTCTTCCTGGAGAAAAGTGAAACCCTGTGAGACATTGTATGCACTGAATTTTTATGACTTCTCTTTCATAGATTTGGTagccttctttttttctttttatttggtcATCTTCCTTCCTTTTTGTTGACATTCTTTTTCTCATGTTAGACCGTTTTCCGATCATACATAAATGATATACTTCCAGATGCTTCATATTCAAGCACAAGAAATTAGTTATCCATTTCGTCTAAACATCTCGAGTATGTTCGACGGgagaaatgtcctttttttctcaaaaaaacgaATTGTACATCTTTTCTTTTAGTCAAATATTTACTCTCGGTTCATAAACGTGggtgattttcttttctttttcttttactcaGACTTTCTACGATTGGGTGCCAATAGCGAggattaaatactaaatatatacacaataatgtACAATTATTATTCACGCGCTCTGCATAGTTTAATTTAACGTTGGACGTTTTATTTGcacataatgtatatatttaagtatagagatttataaacatgaaattttattttggagtaTTTTAACTAAGAGTTGTggtttttttcctctcaattAAAAGAGTGAATTCTgtctttttgcacttttttttggcatatttaCCATGTCCCAGTGCTAGGAGCACTCAACCACTCGGAAAActgctgcagcatttatttgtgaaacatAACTACATGATTCTGACCGTTGATATCCAGTGCTGaaagaactgtatttttaataaccaaCTGCAGCTCATCTGTCCCTGATTTTTgatctttatttttactatGCTCTGCATTAAGTAGGTATTTAACCAGCAAATGCAGTTCTGTTTAAACAAATCTGCTTAACTGTAGTTAAATTGCAGCaaagatttgtttaatataGATTTCAGAATGATAACACTGGACTAATGCACTTATAGATTGtatcaaaaaatgaaataaaactttgcAAATCGCTGTTTGCTTA

Function

symbol description
fbxo8 Predicted to act upstream of or within regulation of ARF protein signal transduction. Is expressed in female organism. Orthologous to human FBXO8 (F-box protein 8).

NR:

description
PREDICTED: F-box only protein 8

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0005634 nucleus cellular_component
GO:0030054 cell junction cellular_component

KEGG:

id description
K10294 FBXO8; F-box protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233942.1 True 2773 mRNA 0.44 6 18679667 18687379

Neighbor

gene id symbol gene type direction distance location
hand2 hand2,LOC107552491,LOC107752229,LOC107670807,LOC107676684,LOC107558779 coding downstream 58505 18619213 ~ 18621162 (-)
hmgb2a hmgb2a,LOC107752228,LOC107670798,LOC107550776,LOC107676685,LOC107558777,LOC107737109 coding downstream 78970 18598352 ~ 18600697 (-)
scpp1 LOC107670780,LOC107550759,LOC107734555,LOC107742551 coding downstream 361586 18315705 ~ 18318081 (-)
tnip2 tnip2,LOC107670772,LOC107742537,LOC107665480,LOC107598727,LOC107734553 coding downstream 365367 18309603 ~ 18314300 (-)
nr3c2 nr3c2,LOC107550687,LOC107670737,LOC107742541,LOC107654985 coding downstream 461387 18153693 ~ 18218280 (-)
hpgd hpgd,LOC107552502,LOC107752225,LOC107676678,LOC107558775,LOC107737128 coding upstream 14250 18701629 ~ 18708478 (-)
glra3 glra3,LOC107670853,LOC107737127,LOC107752223,LOC107552004 coding upstream 21233 18708612 ~ 18747713 (-)
gpm6ab gpm6ab,LOC107737106,LOC107752222,LOC107670876,LOC107676686 coding upstream 106763 18794142 ~ 18838524 (-)
asb5b asb5,asb5b,LOC107670925,LOC107752221,LOC107676689,LOC107737104 coding upstream 171612 18858991 ~ 18867807 (-)
vegfc vegfc,LOC107752233,LOC107670960,LOC107558783,LOC107676691,LOC107737103,LOC107552015 coding upstream 198128 18885507 ~ 18915936 (-)
G4401 NA non-coding downstream 8344 18671018 ~ 18671323 (-)
G4280 NA non-coding downstream 531203 18148154 ~ 18148464 (-)
G4259 ednraa,LOC107598731,LOC107670705,LOC107550651 non-coding downstream 602265 18076973 ~ 18077402 (-)
G4251 NA non-coding downstream 790189 17889148 ~ 17889478 (-)
G4195 NA non-coding downstream 1068362 17610874 ~ 17611305 (-)
G4413 wdr17,LOC107737118 non-coding upstream 159290 18846669 ~ 18850360 (-)
G4433 NA non-coding upstream 181953 18869332 ~ 18872844 (-)
LOC122332954 LOC108434131 non-coding upstream 725870 19413249 ~ 19440859 (-)
G4590 NA non-coding upstream 841372 19528751 ~ 19529251 (-)
G4596 NA non-coding upstream 853205 19540584 ~ 19541350 (-)
znf827 znf827,LOC107550613,LOC107684451,LOC107742547 other downstream 799250 17811459 ~ 17880417 (-)
smad1 smad1,LOC107684445,LOC107734580 other downstream 914935 17745837 ~ 17764732 (-)
LOC122330431 lsm6 other downstream 1242960 17434717 ~ 17436707 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 2231148 16447088 ~ 16448519 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other downstream 2320642 16334202 ~ 16359025 (-)
cdk2ap2 cdk2ap2,LOC107684972 other upstream 848585 19535964 ~ 19539146 (-)
si:dkey-9i23.16 NA other upstream 1449656 20137035 ~ 20140579 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other upstream 1601938 20289317 ~ 20312948 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other upstream 1679750 20367129 ~ 20369111 (-)
G4958 NA other upstream 1996463 20683842 ~ 20686740 (-)

Expression


Co-expression Network